miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29619 3' -49.6 NC_006151.1 + 9198 0.71 0.947089
Target:  5'- uCCGUCUcaugCCACCCGcgGCAg-CAUCCc -3'
miRNA:   3'- -GGUAGGaa--GGUGGGUa-CGUaaGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 18639 0.67 0.993732
Target:  5'- cCCAgcgCCagcacaaacagCCGCCCggGCG-UCGUCCg -3'
miRNA:   3'- -GGUa--GGaa---------GGUGGGuaCGUaAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 22301 0.72 0.926976
Target:  5'- gCGUCCacgUCCGCgCCGaGCG-UCGUCCg -3'
miRNA:   3'- gGUAGGa--AGGUG-GGUaCGUaAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 24574 0.69 0.977257
Target:  5'- aCGUCCUcgaggaagauguucUCCGCCUugacgucgcgAUGCAUgaugcgCAUCCc -3'
miRNA:   3'- gGUAGGA--------------AGGUGGG----------UACGUAa-----GUAGG- -5'
29619 3' -49.6 NC_006151.1 + 26650 0.68 0.986246
Target:  5'- cCCGUCCUccucguccUCCucguCCUcgGCcucgUCGUCCu -3'
miRNA:   3'- -GGUAGGA--------AGGu---GGGuaCGua--AGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 29924 0.72 0.926976
Target:  5'- cCCcUCCUUCC-CCCAauCAUcCAUCCa -3'
miRNA:   3'- -GGuAGGAAGGuGGGUacGUAaGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 36156 0.67 0.995514
Target:  5'- cCCGUCCUccuUCgGCCCAgcaGCAgcagCAgccCCg -3'
miRNA:   3'- -GGUAGGA---AGgUGGGUa--CGUaa--GUa--GG- -5'
29619 3' -49.6 NC_006151.1 + 37475 0.67 0.991886
Target:  5'- aCCGcgCCgcggCCggGCCCGUGCccgucUUCAUCCc -3'
miRNA:   3'- -GGUa-GGaa--GG--UGGGUACGu----AAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 43482 0.68 0.984452
Target:  5'- gCGUCCcucgccUCCAUCCAUcCAcUCAUCCc -3'
miRNA:   3'- gGUAGGa-----AGGUGGGUAcGUaAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 45241 0.66 0.997694
Target:  5'- cCCGUCCUccUCCcCCCuUGCucccuGUCCc -3'
miRNA:   3'- -GGUAGGA--AGGuGGGuACGuaag-UAGG- -5'
29619 3' -49.6 NC_006151.1 + 45970 0.66 0.996753
Target:  5'- uCCAUCC-UCCACCaCGUGgAcagcgacgcUUCGUUUg -3'
miRNA:   3'- -GGUAGGaAGGUGG-GUACgU---------AAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 50178 0.68 0.986246
Target:  5'- gCggCCggCCGCgCcgGUGUUCAUCCa -3'
miRNA:   3'- gGuaGGaaGGUGgGuaCGUAAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 55756 0.72 0.915362
Target:  5'- uCCAUCCUgcgcgugcgCCACCUcgGCuuccUCAUCa -3'
miRNA:   3'- -GGUAGGAa--------GGUGGGuaCGua--AGUAGg -5'
29619 3' -49.6 NC_006151.1 + 66694 0.69 0.982485
Target:  5'- uCCGgggCCUUCCGCCagcuccgGCGcUUCGUCa -3'
miRNA:   3'- -GGUa--GGAAGGUGGgua----CGU-AAGUAGg -5'
29619 3' -49.6 NC_006151.1 + 77209 0.66 0.998072
Target:  5'- uCCAUCCccgcgCCGCCgCGUGUGUgcg-CCg -3'
miRNA:   3'- -GGUAGGaa---GGUGG-GUACGUAaguaGG- -5'
29619 3' -49.6 NC_006151.1 + 78905 0.67 0.992958
Target:  5'- aCGUCCgcgCC-CCCGUcCAUUCucuGUCCg -3'
miRNA:   3'- gGUAGGaa-GGuGGGUAcGUAAG---UAGG- -5'
29619 3' -49.6 NC_006151.1 + 80505 0.67 0.991886
Target:  5'- uCCAgcagCCUUCC-CCCGUGgAUggCGcUCCc -3'
miRNA:   3'- -GGUa---GGAAGGuGGGUACgUAa-GU-AGG- -5'
29619 3' -49.6 NC_006151.1 + 80538 0.7 0.962799
Target:  5'- gCAUCCccUCCACCCgacucucGUGaugUCAUCCc -3'
miRNA:   3'- gGUAGGa-AGGUGGG-------UACguaAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 92250 0.72 0.909167
Target:  5'- aUCGUCCa-CCGCCUcUGCGUcaaccUCAUCCg -3'
miRNA:   3'- -GGUAGGaaGGUGGGuACGUA-----AGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 93251 0.68 0.986074
Target:  5'- aCCAUCCUuccccaguccaagUCCACCCccGCcggcccCAUCUc -3'
miRNA:   3'- -GGUAGGA-------------AGGUGGGuaCGuaa---GUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.