miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29619 3' -49.6 NC_006151.1 + 43482 0.68 0.984452
Target:  5'- gCGUCCcucgccUCCAUCCAUcCAcUCAUCCc -3'
miRNA:   3'- gGUAGGa-----AGGUGGGUAcGUaAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 66694 0.69 0.982485
Target:  5'- uCCGgggCCUUCCGCCagcuccgGCGcUUCGUCa -3'
miRNA:   3'- -GGUa--GGAAGGUGGgua----CGU-AAGUAGg -5'
29619 3' -49.6 NC_006151.1 + 100591 0.69 0.977997
Target:  5'- aCCGUCCUgCgGCCCGUGgAgcgCuUCCu -3'
miRNA:   3'- -GGUAGGAaGgUGGGUACgUaa-GuAGG- -5'
29619 3' -49.6 NC_006151.1 + 24574 0.69 0.977257
Target:  5'- aCGUCCUcgaggaagauguucUCCGCCUugacgucgcgAUGCAUgaugcgCAUCCc -3'
miRNA:   3'- gGUAGGA--------------AGGUGGG----------UACGUAa-----GUAGG- -5'
29619 3' -49.6 NC_006151.1 + 131808 0.69 0.975458
Target:  5'- gCCAUCCUccUCgGCCUcgGCuagCGUCa -3'
miRNA:   3'- -GGUAGGA--AGgUGGGuaCGuaaGUAGg -5'
29619 3' -49.6 NC_006151.1 + 127874 0.69 0.972712
Target:  5'- gCCcgCCgccgUCCACCUccaGCucgUCGUCCg -3'
miRNA:   3'- -GGuaGGa---AGGUGGGua-CGua-AGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 99810 0.7 0.969751
Target:  5'- cCCGUCCUUCgCGCCCuuc--UUCGUCg -3'
miRNA:   3'- -GGUAGGAAG-GUGGGuacguAAGUAGg -5'
29619 3' -49.6 NC_006151.1 + 80538 0.7 0.962799
Target:  5'- gCAUCCccUCCACCCgacucucGUGaugUCAUCCc -3'
miRNA:   3'- gGUAGGa-AGGUGGG-------UACguaAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 136682 0.7 0.957977
Target:  5'- gCCGccUUCUUCCGCCaCGUGCGggcgcagcucaaCAUCCg -3'
miRNA:   3'- -GGU--AGGAAGGUGG-GUACGUaa----------GUAGG- -5'
29619 3' -49.6 NC_006151.1 + 9198 0.71 0.947089
Target:  5'- uCCGUCUcaugCCACCCGcgGCAg-CAUCCc -3'
miRNA:   3'- -GGUAGGaa--GGUGGGUa-CGUaaGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 29924 0.72 0.926976
Target:  5'- cCCcUCCUUCC-CCCAauCAUcCAUCCa -3'
miRNA:   3'- -GGuAGGAAGGuGGGUacGUAaGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 22301 0.72 0.926976
Target:  5'- gCGUCCacgUCCGCgCCGaGCG-UCGUCCg -3'
miRNA:   3'- gGUAGGa--AGGUG-GGUaCGUaAGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 55756 0.72 0.915362
Target:  5'- uCCAUCCUgcgcgugcgCCACCUcgGCuuccUCAUCa -3'
miRNA:   3'- -GGUAGGAa--------GGUGGGuaCGua--AGUAGg -5'
29619 3' -49.6 NC_006151.1 + 92250 0.72 0.909167
Target:  5'- aUCGUCCa-CCGCCUcUGCGUcaaccUCAUCCg -3'
miRNA:   3'- -GGUAGGaaGGUGGGuACGUA-----AGUAGG- -5'
29619 3' -49.6 NC_006151.1 + 133005 0.76 0.768802
Target:  5'- ---cCCUUCCGCCCGggggUGCucUCGUCCa -3'
miRNA:   3'- gguaGGAAGGUGGGU----ACGuaAGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.