Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2962 | 3' | -53.6 | NC_001493.1 | + | 85696 | 1.11 | 0.00323 |
Target: 5'- gGCCCUUCCAAUCACCGAGUCCAUCCGa -3' miRNA: 3'- -CGGGAAGGUUAGUGGCUCAGGUAGGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 26901 | 0.74 | 0.603539 |
Target: 5'- aGUCCgagUCCGAgu-CCGAGUCCgaGUCCGa -3' miRNA: 3'- -CGGGa--AGGUUaguGGCUCAGG--UAGGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 53012 | 0.73 | 0.645121 |
Target: 5'- cCCUUUCC--UgGCCGAGUCCAUCaCGu -3' miRNA: 3'- cGGGAAGGuuAgUGGCUCAGGUAG-GC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 123216 | 0.72 | 0.727188 |
Target: 5'- cGCCCUcCCGAUcCACCGGGcCCGaaaCCGc -3' miRNA: 3'- -CGGGAaGGUUA-GUGGCUCaGGUa--GGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 7661 | 0.72 | 0.727188 |
Target: 5'- cGCCCUcCCGAUcCACCGGGcCCGaaaCCGc -3' miRNA: 3'- -CGGGAaGGUUA-GUGGCUCaGGUa--GGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 93673 | 0.72 | 0.747049 |
Target: 5'- cGCCCg-CCGAUUuacccCCGGGUCCGUUCa -3' miRNA: 3'- -CGGGaaGGUUAGu----GGCUCAGGUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 131731 | 0.71 | 0.776034 |
Target: 5'- -aCCUUCCcgcacUCACCGAgaccuuccuGUCCAUCCu -3' miRNA: 3'- cgGGAAGGuu---AGUGGCU---------CAGGUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 24615 | 0.71 | 0.794708 |
Target: 5'- cCCCgguUUCGucCACCGAGUCCAUCUu -3' miRNA: 3'- cGGGa--AGGUuaGUGGCUCAGGUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 120703 | 0.7 | 0.803823 |
Target: 5'- aGCCCc-CCGGUCACCGGGgCCGagCGu -3' miRNA: 3'- -CGGGaaGGUUAGUGGCUCaGGUagGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 5148 | 0.7 | 0.803823 |
Target: 5'- aGCCCc-CCGGUCACCGGGgCCGagCGu -3' miRNA: 3'- -CGGGaaGGUUAGUGGCUCaGGUagGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 16176 | 0.7 | 0.812777 |
Target: 5'- -aCCUUCCccgcacUCACCGAgaccuuccuGUCCAUCCu -3' miRNA: 3'- cgGGAAGGuu----AGUGGCU---------CAGGUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 28556 | 0.7 | 0.830168 |
Target: 5'- cGCCCgaguUCCg--CcUCGAGUCCAUCCc -3' miRNA: 3'- -CGGGa---AGGuuaGuGGCUCAGGUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 49820 | 0.68 | 0.898408 |
Target: 5'- cGCCaaUCCAGUUcCCGA--CCGUCCGg -3' miRNA: 3'- -CGGgaAGGUUAGuGGCUcaGGUAGGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 42037 | 0.68 | 0.898408 |
Target: 5'- uGCCCgagUgCGAUCACCccGUUCAUUCGu -3' miRNA: 3'- -CGGGa--AgGUUAGUGGcuCAGGUAGGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 44179 | 0.68 | 0.904858 |
Target: 5'- gGCCCUgggggagCCGAUCAgCCGcAGUCag-CCGc -3' miRNA: 3'- -CGGGAa------GGUUAGU-GGC-UCAGguaGGC- -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 110786 | 0.68 | 0.904858 |
Target: 5'- gGCCCUUCCAGUCgu-GAGaCaCGUCCu -3' miRNA: 3'- -CGGGAAGGUUAGuggCUCaG-GUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 133831 | 0.68 | 0.917029 |
Target: 5'- gGCUCUUCCcaGAaCGgCGGGUUCAUCCc -3' miRNA: 3'- -CGGGAAGG--UUaGUgGCUCAGGUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 18277 | 0.68 | 0.917029 |
Target: 5'- gGCUCUUCCcaGAaCGgCGGGUUCAUCCc -3' miRNA: 3'- -CGGGAAGG--UUaGUgGCUCAGGUAGGc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 68275 | 0.67 | 0.922746 |
Target: 5'- gGCCCagcgUgCAGUUACCcAGUCCGUCg- -3' miRNA: 3'- -CGGGa---AgGUUAGUGGcUCAGGUAGgc -5' |
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2962 | 3' | -53.6 | NC_001493.1 | + | 32745 | 0.67 | 0.93344 |
Target: 5'- cGCCCgucCCGGUCgcgACCG-GUCCGgcCCGa -3' miRNA: 3'- -CGGGaa-GGUUAG---UGGCuCAGGUa-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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