miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2962 5' -55.2 NC_001493.1 + 76025 0.66 0.926897
Target:  5'- -aCGGuUGGUCUUGuCGCuguccaCGAUGGUuucaGGa -3'
miRNA:   3'- gaGCCuACCAGAAC-GCG------GCUACCA----CC- -5'
2962 5' -55.2 NC_001493.1 + 20722 0.66 0.921434
Target:  5'- -aUGGGU-GUCUUGCaucCCGAcgGGUGGg -3'
miRNA:   3'- gaGCCUAcCAGAACGc--GGCUa-CCACC- -5'
2962 5' -55.2 NC_001493.1 + 62753 0.66 0.91573
Target:  5'- gUCGuGGUGGUCacgGUGCCGuUGGcucccgUGGg -3'
miRNA:   3'- gAGC-CUACCAGaa-CGCGGCuACC------ACC- -5'
2962 5' -55.2 NC_001493.1 + 62669 0.66 0.91573
Target:  5'- gUCGuGGUGGUCacgGUGCCGuUGGcucccgUGGg -3'
miRNA:   3'- gAGC-CUACCAGaa-CGCGGCuACC------ACC- -5'
2962 5' -55.2 NC_001493.1 + 103584 0.67 0.897186
Target:  5'- -gUGGggGGUCggaacGCGCCGGUGaucccacccgaGUGGa -3'
miRNA:   3'- gaGCCuaCCAGaa---CGCGGCUAC-----------CACC- -5'
2962 5' -55.2 NC_001493.1 + 62956 0.67 0.890536
Target:  5'- gUCGuGGUGGUCacgGUGCCGGUcgcccccGUGGg -3'
miRNA:   3'- gAGC-CUACCAGaa-CGCGGCUAc------CACC- -5'
2962 5' -55.2 NC_001493.1 + 62795 0.67 0.890536
Target:  5'- gUCGuGGUGGUCacgGUGCCGGUcgcccccGUGGg -3'
miRNA:   3'- gAGC-CUACCAGaa-CGCGGCUAc------CACC- -5'
2962 5' -55.2 NC_001493.1 + 62711 0.67 0.890536
Target:  5'- gUCGuGGUGGUCacgGUGCCGGUcgcccccGUGGg -3'
miRNA:   3'- gAGC-CUACCAGaa-CGCGGCUAc------CACC- -5'
2962 5' -55.2 NC_001493.1 + 28635 0.68 0.837844
Target:  5'- aUCGGGUGGUCcUGCG-CGAUGa--- -3'
miRNA:   3'- gAGCCUACCAGaACGCgGCUACcacc -5'
2962 5' -55.2 NC_001493.1 + 133191 0.71 0.697716
Target:  5'- gCUCGGGUGGcgCguaggccuccGUGCCGAUGG-GGu -3'
miRNA:   3'- -GAGCCUACCa-Gaa--------CGCGGCUACCaCC- -5'
2962 5' -55.2 NC_001493.1 + 17637 0.71 0.697716
Target:  5'- gCUCGGGUGGcgCguaggccuccGUGCCGAUGG-GGu -3'
miRNA:   3'- -GAGCCUACCa-Gaa--------CGCGGCUACCaCC- -5'
2962 5' -55.2 NC_001493.1 + 87258 0.72 0.646689
Target:  5'- aUCGGAgaUGGUC--GCGaCCGGguUGGUGGa -3'
miRNA:   3'- gAGCCU--ACCAGaaCGC-GGCU--ACCACC- -5'
2962 5' -55.2 NC_001493.1 + 118553 0.73 0.605602
Target:  5'- -gCGGAUGGUC--GUGCUcaacggGAUGGUGGa -3'
miRNA:   3'- gaGCCUACCAGaaCGCGG------CUACCACC- -5'
2962 5' -55.2 NC_001493.1 + 2998 0.73 0.605602
Target:  5'- -gCGGAUGGUC--GUGCUcaacggGAUGGUGGa -3'
miRNA:   3'- gaGCCUACCAGaaCGCGG------CUACCACC- -5'
2962 5' -55.2 NC_001493.1 + 85661 1.11 0.002419
Target:  5'- uCUCGGAUGGUCUUGCGCCGAUGGUGGg -3'
miRNA:   3'- -GAGCCUACCAGAACGCGGCUACCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.