Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29620 | 3' | -55.3 | NC_006151.1 | + | 41900 | 0.68 | 0.833274 |
Target: 5'- aGCGGUCauauuuaaauaggGGGGAGggGUuaugcagauuagggGGAGGGGUuauGCa -3' miRNA: 3'- -CGCUAG-------------CUCCUCuaCA--------------CCUCCCCA---CG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 127266 | 0.69 | 0.819762 |
Target: 5'- cGCGGUggccggUGAGGucGAUGacgGGucGGGGGUGCu -3' miRNA: 3'- -CGCUA------GCUCCu-CUACa--CC--UCCCCACG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 133631 | 0.69 | 0.811093 |
Target: 5'- cGCGG-CGGccGGGGcgGUGGuccGGGUGCg -3' miRNA: 3'- -CGCUaGCU--CCUCuaCACCuc-CCCACG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 45033 | 0.69 | 0.811093 |
Target: 5'- aGCGAaUGGGG-GAagcGUGG-GGGGUGUg -3' miRNA: 3'- -CGCUaGCUCCuCUa--CACCuCCCCACG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 14505 | 0.69 | 0.811093 |
Target: 5'- aGgGAUCG-GGGGAaGgGGGGGGGUcGUg -3' miRNA: 3'- -CgCUAGCuCCUCUaCaCCUCCCCA-CG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 31411 | 0.69 | 0.793278 |
Target: 5'- gGCGAggggaaGGGGaAGggGggGGAcGGGGUGCg -3' miRNA: 3'- -CGCUag----CUCC-UCuaCa-CCU-CCCCACG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 33082 | 0.69 | 0.784149 |
Target: 5'- aGgGggCGAGGgcgGGcgGUGGAGGGGg-- -3' miRNA: 3'- -CgCuaGCUCC---UCuaCACCUCCCCacg -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 80029 | 0.7 | 0.755979 |
Target: 5'- gGCGAUCGGGGAcGGg--GGAGGcGGgagucugGCu -3' miRNA: 3'- -CGCUAGCUCCU-CUacaCCUCC-CCa------CG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 71551 | 0.7 | 0.755979 |
Target: 5'- uGCGAggGAGGGGggG-GcGAGGGGgacggGCg -3' miRNA: 3'- -CGCUagCUCCUCuaCaC-CUCCCCa----CG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 27532 | 0.7 | 0.755979 |
Target: 5'- cGUGGggGGGGGGggGgggGGGGGGGggGCu -3' miRNA: 3'- -CGCUagCUCCUCuaCa--CCUCCCCa-CG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 30402 | 0.7 | 0.746359 |
Target: 5'- cGCGAgucgaCGGGGAGAggaaGGAGGGGa-- -3' miRNA: 3'- -CGCUa----GCUCCUCUaca-CCUCCCCacg -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 44768 | 0.71 | 0.725842 |
Target: 5'- uGCGAUCGcgcggagagagcgGGGAGAagcgggggGUGaaaGGGGGUGCu -3' miRNA: 3'- -CGCUAGC-------------UCCUCUa-------CACc--UCCCCACG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 66823 | 0.71 | 0.696941 |
Target: 5'- gGCGA-CGAGGAGGa-UGGGGGGGa-- -3' miRNA: 3'- -CGCUaGCUCCUCUacACCUCCCCacg -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 1962 | 0.71 | 0.686859 |
Target: 5'- ---cUCGAGGAGccgGUGGAGGGGc-- -3' miRNA: 3'- cgcuAGCUCCUCua-CACCUCCCCacg -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 26287 | 0.71 | 0.686859 |
Target: 5'- gGCGGaCGGuGGGGUG-GGGGGGGUGg -3' miRNA: 3'- -CGCUaGCUcCUCUACaCCUCCCCACg -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 29787 | 0.71 | 0.676731 |
Target: 5'- -aGAgagaGAGGAGAgGgaggGGAGGGGUGg -3' miRNA: 3'- cgCUag--CUCCUCUaCa---CCUCCCCACg -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 43238 | 0.72 | 0.666567 |
Target: 5'- gGCGAcacCGGGGAGugcGUGcgGGuguGGGGUGCu -3' miRNA: 3'- -CGCUa--GCUCCUC---UACa-CCu--CCCCACG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 42810 | 0.72 | 0.666567 |
Target: 5'- cGCG-UCGAGGucGUGUGGGggagagagacGGGGUGg -3' miRNA: 3'- -CGCuAGCUCCucUACACCU----------CCCCACg -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 11799 | 0.72 | 0.635941 |
Target: 5'- gGCGAgaggggCGGGGuGggGUGGGGGGcGgcgGCg -3' miRNA: 3'- -CGCUa-----GCUCCuCuaCACCUCCC-Ca--CG- -5' |
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29620 | 3' | -55.3 | NC_006151.1 | + | 33160 | 0.72 | 0.622649 |
Target: 5'- gGCgGGUCGggggcggggaggaaGGGAGGUGUGGGGGGaugGCc -3' miRNA: 3'- -CG-CUAGC--------------UCCUCUACACCUCCCca-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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