miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29621 3' -59.2 NC_006151.1 + 32620 0.66 0.72398
Target:  5'- cGCCGcg-CCUCUCCCUcCCGCUUCc- -3'
miRNA:   3'- -UGGUaaaGGGGAGGGGaGGCGAGGug -5'
29621 3' -59.2 NC_006151.1 + 32228 0.66 0.72398
Target:  5'- cCCGUUUUUCCUCCUggCCGCggcgaCCGCc -3'
miRNA:   3'- uGGUAAAGGGGAGGGgaGGCGa----GGUG- -5'
29621 3' -59.2 NC_006151.1 + 80595 0.66 0.72398
Target:  5'- cCCGUgccgUCCCuCUCCCCccucCCGuCUCC-Cg -3'
miRNA:   3'- uGGUAa---AGGG-GAGGGGa---GGC-GAGGuG- -5'
29621 3' -59.2 NC_006151.1 + 109398 0.67 0.714169
Target:  5'- cGCCGg--CCCCaCCaCCUUCGCggccggCCGCa -3'
miRNA:   3'- -UGGUaaaGGGGaGG-GGAGGCGa-----GGUG- -5'
29621 3' -59.2 NC_006151.1 + 101804 0.67 0.714169
Target:  5'- cGCCGUcgCCCCcgUCCCCgccguccCCGuCUCgGCg -3'
miRNA:   3'- -UGGUAaaGGGG--AGGGGa------GGC-GAGgUG- -5'
29621 3' -59.2 NC_006151.1 + 87680 0.67 0.714169
Target:  5'- gGCCGc--CCCgCUCCCUUCCcGC-CCGCc -3'
miRNA:   3'- -UGGUaaaGGG-GAGGGGAGG-CGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 62692 0.67 0.714169
Target:  5'- cGCCccugUCCCUugUCCCCggucCCGCcCCGCc -3'
miRNA:   3'- -UGGuaa-AGGGG--AGGGGa---GGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 8223 0.67 0.714169
Target:  5'- gGCCGggUCCCCUUCCCggcggggagggCCGggCCGg -3'
miRNA:   3'- -UGGUaaAGGGGAGGGGa----------GGCgaGGUg -5'
29621 3' -59.2 NC_006151.1 + 34099 0.67 0.714169
Target:  5'- uCCAUUUugggCCCCgCCCCUuuGCacCCGCc -3'
miRNA:   3'- uGGUAAA----GGGGaGGGGAggCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 7856 0.67 0.704291
Target:  5'- cACCcac-CCCCUCCUCUCC-C-CCACc -3'
miRNA:   3'- -UGGuaaaGGGGAGGGGAGGcGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 12620 0.67 0.704291
Target:  5'- cCCAUUUCCCCcacccccaauUCCCCcacUCCuC-CCACa -3'
miRNA:   3'- uGGUAAAGGGG----------AGGGG---AGGcGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 33796 0.67 0.704291
Target:  5'- gACCA--UCCguCCUCCCgaCC-CUCCACg -3'
miRNA:   3'- -UGGUaaAGG--GGAGGGgaGGcGAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 119500 0.67 0.694353
Target:  5'- cGCCGaggUCCCCUgCUCgCUCUGCgaCCGCg -3'
miRNA:   3'- -UGGUaa-AGGGGA-GGG-GAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 48696 0.67 0.694353
Target:  5'- aGCCGg--CCCga-CCCUCCGCcgCCGCc -3'
miRNA:   3'- -UGGUaaaGGGgagGGGAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 8906 0.67 0.694353
Target:  5'- uCCGUcuccUCUCCUCCUCUCCuCUCCcCg -3'
miRNA:   3'- uGGUAa---AGGGGAGGGGAGGcGAGGuG- -5'
29621 3' -59.2 NC_006151.1 + 42562 0.67 0.684364
Target:  5'- cGCCA---CCCC-CCUCUCCgGCgCCACg -3'
miRNA:   3'- -UGGUaaaGGGGaGGGGAGG-CGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 9014 0.67 0.684364
Target:  5'- cACCcUUcCCCCggacCCCCUCCcGC-CCGCc -3'
miRNA:   3'- -UGGuAAaGGGGa---GGGGAGG-CGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 12874 0.67 0.684364
Target:  5'- cGCCucuccucUCCUCUCCCCccaucCCGCcCCGCu -3'
miRNA:   3'- -UGGuaa----AGGGGAGGGGa----GGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 34199 0.67 0.684364
Target:  5'- cGCCAUcuuggcUCCCCUCCCC-CCaaCUCCc- -3'
miRNA:   3'- -UGGUAa-----AGGGGAGGGGaGGc-GAGGug -5'
29621 3' -59.2 NC_006151.1 + 131347 0.67 0.682361
Target:  5'- cGCCGgcccccgcucgUCCUCUCCuCCUCCGCcCCc- -3'
miRNA:   3'- -UGGUaa---------AGGGGAGG-GGAGGCGaGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.