Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29622 | 3' | -58.3 | NC_006151.1 | + | 80076 | 0.66 | 0.776033 |
Target: 5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3' miRNA: 3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 80121 | 0.66 | 0.776033 |
Target: 5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3' miRNA: 3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 80166 | 0.66 | 0.776033 |
Target: 5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3' miRNA: 3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 80211 | 0.66 | 0.776033 |
Target: 5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3' miRNA: 3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 72597 | 0.66 | 0.776033 |
Target: 5'- --gGGuGAG-GGGGGgGGcAGGGCGGAGa -3' miRNA: 3'- cgaCC-CUCaCCCCUgCC-UUCUGCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 135132 | 0.66 | 0.774183 |
Target: 5'- gGCUGGGc--GGGGACGGGcagacccagcccGGCGGGc -3' miRNA: 3'- -CGACCCucaCCCCUGCCUu-----------CUGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 42092 | 0.66 | 0.772328 |
Target: 5'- --aGGGGGUGGGGuuaugcagaucaGGggGAgGGGu -3' miRNA: 3'- cgaCCCUCACCCCug----------CCuuCUgCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 20618 | 0.67 | 0.766734 |
Target: 5'- gGCgUGGGguGGUGGGGGCGcccccuGGGCGGc- -3' miRNA: 3'- -CG-ACCC--UCACCCCUGCcu----UCUGCCuu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 142379 | 0.67 | 0.757318 |
Target: 5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3' miRNA: 3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 142431 | 0.67 | 0.757318 |
Target: 5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3' miRNA: 3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 142483 | 0.67 | 0.757318 |
Target: 5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3' miRNA: 3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 142535 | 0.67 | 0.757318 |
Target: 5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3' miRNA: 3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 8050 | 0.67 | 0.757318 |
Target: 5'- --aGGGAGUuggGGGGAgGGGAgccaagauggcGACGGGg -3' miRNA: 3'- cgaCCCUCA---CCCCUgCCUU-----------CUGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 29210 | 0.67 | 0.757318 |
Target: 5'- cGCgGcGGGGUGGGGAUGGGucaccGcCGGGu -3' miRNA: 3'- -CGaC-CCUCACCCCUGCCUu----CuGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 5038 | 0.67 | 0.757318 |
Target: 5'- gGCcgGGGAGgccgcGGcGGAgGaGGAGGCGGAGg -3' miRNA: 3'- -CGa-CCCUCa----CC-CCUgC-CUUCUGCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 41860 | 0.67 | 0.751616 |
Target: 5'- -aUGGGGG-GGGGGgGGAGGAgcccggcgucacgucCGGGGa -3' miRNA: 3'- cgACCCUCaCCCCUgCCUUCU---------------GCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 130924 | 0.67 | 0.747794 |
Target: 5'- gGCcGGGcccGcGGGGGCGGggGcgGCGGGGg -3' miRNA: 3'- -CGaCCCu--CaCCCCUGCCuuC--UGCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 45595 | 0.67 | 0.747794 |
Target: 5'- --aGGGGGcGGGGggagccccgACGGGgcGGGCGGAAg -3' miRNA: 3'- cgaCCCUCaCCCC---------UGCCU--UCUGCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 23412 | 0.67 | 0.747794 |
Target: 5'- cGCUGGuGGucgccggccGUGGGGGCGauGGGugGGAGg -3' miRNA: 3'- -CGACC-CU---------CACCCCUGCc-UUCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 41373 | 0.67 | 0.738169 |
Target: 5'- --gGGGAGggaaaGGcGGugGGAgagcGGGCGGAAc -3' miRNA: 3'- cgaCCCUCa----CC-CCugCCU----UCUGCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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