miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 5' -61.7 NC_006151.1 + 39538 0.67 0.574073
Target:  5'- cUGcUUCGCCCGCguggaggcCUCCUucgcCCGCCUg -3'
miRNA:   3'- -ACaAGGCGGGCGa-------GAGGGu---GGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 142950 0.67 0.564205
Target:  5'- ----gCGCCCGCccUCgCCCAUCGCCa- -3'
miRNA:   3'- acaagGCGGGCG--AGaGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 66033 0.67 0.564205
Target:  5'- --gUCCGCCCGCgugaaCCGCCgguGCCUg -3'
miRNA:   3'- acaAGGCGGGCGagag-GGUGG---CGGAa -5'
29622 5' -61.7 NC_006151.1 + 12814 0.67 0.554383
Target:  5'- --cUCCGCguCCcCUCUcCCCGCCGCCc- -3'
miRNA:   3'- acaAGGCG--GGcGAGA-GGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 8877 0.67 0.554383
Target:  5'- cUGUccUCCGCCCGacuuuccgaCUCUCCU-CCGUCUc -3'
miRNA:   3'- -ACA--AGGCGGGC---------GAGAGGGuGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 32183 0.67 0.551446
Target:  5'- --cUCCGCCCGcCUUUCCUucccggacucgggaGCCGCUc- -3'
miRNA:   3'- acaAGGCGGGC-GAGAGGG--------------UGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 109377 0.67 0.544612
Target:  5'- -cUUCCGCCCccGC-CgcaCCACCGCCg- -3'
miRNA:   3'- acAAGGCGGG--CGaGag-GGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 14805 0.67 0.544612
Target:  5'- ---aCCGCCCGCcCccgaCCCACCGCg-- -3'
miRNA:   3'- acaaGGCGGGCGaGa---GGGUGGCGgaa -5'
29622 5' -61.7 NC_006151.1 + 127775 0.67 0.544612
Target:  5'- cGUcgUCGCCCuccccCUCcCCCGCCGCCg- -3'
miRNA:   3'- aCAa-GGCGGGc----GAGaGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 109283 0.67 0.540718
Target:  5'- ---gCCGCCCcCUCcgagaucgagcggCCCGCCGCCUc -3'
miRNA:   3'- acaaGGCGGGcGAGa------------GGGUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 39667 0.67 0.534896
Target:  5'- ---gCCGCCgCGCg--CCUACCGCCa- -3'
miRNA:   3'- acaaGGCGG-GCGagaGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 56193 0.67 0.534896
Target:  5'- cGUgCCGCCgGUggcgCUgCCgCACCGCCUg -3'
miRNA:   3'- aCAaGGCGGgCGa---GA-GG-GUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 38572 0.67 0.525244
Target:  5'- aGcgCCGCgCGCcCggggCCCGCCGCCc- -3'
miRNA:   3'- aCaaGGCGgGCGaGa---GGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 98607 0.68 0.506143
Target:  5'- aUGUUCCGCCuCGUgagCgaguggUgCGCCGCCUUc -3'
miRNA:   3'- -ACAAGGCGG-GCGa--Ga-----GgGUGGCGGAA- -5'
29622 5' -61.7 NC_006151.1 + 79718 0.68 0.496704
Target:  5'- cGgaCCGCCguCGCUCggaCCCGCCGUCc- -3'
miRNA:   3'- aCaaGGCGG--GCGAGa--GGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 118711 0.68 0.487345
Target:  5'- ---aCgGCCCGCUCUgCCGCCuGCUg- -3'
miRNA:   3'- acaaGgCGGGCGAGAgGGUGG-CGGaa -5'
29622 5' -61.7 NC_006151.1 + 12899 0.68 0.487345
Target:  5'- ---cCCGcCCCGCUC-CCCGCCcCCUc -3'
miRNA:   3'- acaaGGC-GGGCGAGaGGGUGGcGGAa -5'
29622 5' -61.7 NC_006151.1 + 60652 0.68 0.47807
Target:  5'- cGgcCCGCgCCGCguccucgCUCCCgucGCCGCCg- -3'
miRNA:   3'- aCaaGGCG-GGCGa------GAGGG---UGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 37166 0.68 0.47807
Target:  5'- cGUcUCCGCCgGCg--CCCGCCGCg-- -3'
miRNA:   3'- aCA-AGGCGGgCGagaGGGUGGCGgaa -5'
29622 5' -61.7 NC_006151.1 + 11660 0.68 0.476226
Target:  5'- ---aCCGCCCGCguuugcuacgaUCCCugCGCCc- -3'
miRNA:   3'- acaaGGCGGGCGag---------AGGGugGCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.