Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29624 | 3' | -58.4 | NC_006151.1 | + | 133670 | 0.66 | 0.80854 |
Target: 5'- gCCGgcgcGGCGgcgcgcCCCCGAggcgGUcucGuCGGCGGCg -3' miRNA: 3'- -GGUa---CCGCa-----GGGGCUa---CA---C-GCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 9042 | 0.66 | 0.80854 |
Target: 5'- gCCggGGCG-CCCCGc-GUGCuccGGgGGCg -3' miRNA: 3'- -GGuaCCGCaGGGGCuaCACG---CCgUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 94272 | 0.66 | 0.80854 |
Target: 5'- uCCuUGGCGUCgUCGcccaGCGGCAGg -3' miRNA: 3'- -GGuACCGCAGgGGCuacaCGCCGUCg -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 7514 | 0.66 | 0.799831 |
Target: 5'- -uGUGGUgGUCUCUGuguUGUGUGGUGGUa -3' miRNA: 3'- ggUACCG-CAGGGGCu--ACACGCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 133379 | 0.66 | 0.790977 |
Target: 5'- -gGUGGCGg--CCGGg--GCGGCGGCc -3' miRNA: 3'- ggUACCGCaggGGCUacaCGCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 61447 | 0.66 | 0.790977 |
Target: 5'- cCCGcccGCGUCCgCCGccAUGUGCgGGCcGCg -3' miRNA: 3'- -GGUac-CGCAGG-GGC--UACACG-CCGuCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 65390 | 0.67 | 0.781985 |
Target: 5'- cCCcgGGCGcgCCgUGAgcgaGCGGCGGUa -3' miRNA: 3'- -GGuaCCGCa-GGgGCUaca-CGCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 114395 | 0.67 | 0.781985 |
Target: 5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3' miRNA: 3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 81243 | 0.67 | 0.781985 |
Target: 5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3' miRNA: 3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 51976 | 0.67 | 0.781985 |
Target: 5'- uCCAgcgaGGCGagcagCUCCGcgGUGCcGGCGuGCa -3' miRNA: 3'- -GGUa---CCGCa----GGGGCuaCACG-CCGU-CG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 41051 | 0.67 | 0.772863 |
Target: 5'- ---gGGgGUCCuuGAUGgugGUGGUGGUg -3' miRNA: 3'- gguaCCgCAGGggCUACa--CGCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 106776 | 0.67 | 0.772863 |
Target: 5'- gCGUGaGCG-CCUgGAccUGgccGCGGCGGCg -3' miRNA: 3'- gGUAC-CGCaGGGgCU--ACa--CGCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 104790 | 0.67 | 0.772863 |
Target: 5'- gCCAUGcGCGcgcucgugcgCCgCGAccUG-GCGGCGGCg -3' miRNA: 3'- -GGUAC-CGCa---------GGgGCU--ACaCGCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 2689 | 0.67 | 0.763621 |
Target: 5'- ---cGGCucggCCCCGggGUGCaGGCGGg -3' miRNA: 3'- gguaCCGca--GGGGCuaCACG-CCGUCg -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 119357 | 0.67 | 0.763621 |
Target: 5'- gCCAUGGaccaCCUGGUGaugGCGuGCGGCu -3' miRNA: 3'- -GGUACCgcagGGGCUACa--CGC-CGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 19938 | 0.67 | 0.763621 |
Target: 5'- gCAUGGUcucaaCCCCGGUGUGUcgagacucgcggGGguGCc -3' miRNA: 3'- gGUACCGca---GGGGCUACACG------------CCguCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 17372 | 0.67 | 0.762691 |
Target: 5'- gCCGUGGgGUCggaccgugUCCGcacgacggggcgcGUGgcgcGCGGCAGCa -3' miRNA: 3'- -GGUACCgCAG--------GGGC-------------UACa---CGCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 48109 | 0.67 | 0.754267 |
Target: 5'- cUCGUGGCGgUgCUGGUGUuuuuuuCGGCGGCg -3' miRNA: 3'- -GGUACCGCaGgGGCUACAc-----GCCGUCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 114689 | 0.67 | 0.754267 |
Target: 5'- cUCGUGcucgaagggcGCGUCCCCGggG-GCGGUuuccggaauaaAGCg -3' miRNA: 3'- -GGUAC----------CGCAGGGGCuaCaCGCCG-----------UCG- -5' |
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29624 | 3' | -58.4 | NC_006151.1 | + | 50666 | 0.67 | 0.754267 |
Target: 5'- gUCGUGcGCGgccgcacCCCCGcgccgccGCGGCAGCg -3' miRNA: 3'- -GGUAC-CGCa------GGGGCuaca---CGCCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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