Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29624 | 5' | -57.6 | NC_006151.1 | + | 4583 | 1.08 | 0.001959 |
Target: 5'- cACGCUGCCGGUGAUGAAGGAGCCGUGg -3' miRNA: 3'- -UGCGACGGCCACUACUUCCUCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 49606 | 0.76 | 0.275672 |
Target: 5'- cGCGCUGCCGGUccuGGcggugcugcgcgagUGggGGugGGCCGUGg -3' miRNA: 3'- -UGCGACGGCCA---CU--------------ACuuCC--UCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 13961 | 0.76 | 0.290921 |
Target: 5'- gACGC-GCCGGccAUGggGGAGCCGg- -3' miRNA: 3'- -UGCGaCGGCCacUACuuCCUCGGCac -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 13401 | 0.74 | 0.372899 |
Target: 5'- gACGC-GCCGGccaAUGggGGAGCCGg- -3' miRNA: 3'- -UGCGaCGGCCac-UACuuCCUCGGCac -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 103902 | 0.73 | 0.427324 |
Target: 5'- gGCGCUGgaGGUGGcgcgcgcggccgccgUGGAGGAGCCGc- -3' miRNA: 3'- -UGCGACggCCACU---------------ACUUCCUCGGCac -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 103809 | 0.72 | 0.469223 |
Target: 5'- cGCGCUGUCGGcgGccGUGgcGGcGGCCGUGg -3' miRNA: 3'- -UGCGACGGCCa-C--UACuuCC-UCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 87405 | 0.71 | 0.526823 |
Target: 5'- -aGCaGCCGGUGGUGGugcAGGcccagccgguGGCCGUGc -3' miRNA: 3'- ugCGaCGGCCACUACU---UCC----------UCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 43216 | 0.71 | 0.550613 |
Target: 5'- gGCGCUGCCGGgGggGAaaaggggcgacaccgGGGAGUgCGUGc -3' miRNA: 3'- -UGCGACGGCCaCuaCU---------------UCCUCG-GCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 103973 | 0.71 | 0.566655 |
Target: 5'- aGCGC-GUCGGcGAgcUGGAGGcGGCCGUGg -3' miRNA: 3'- -UGCGaCGGCCaCU--ACUUCC-UCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 28533 | 0.7 | 0.597029 |
Target: 5'- gGCGUccggGaCCGGccaAUGggGGAGCCGUGc -3' miRNA: 3'- -UGCGa---C-GGCCac-UACuuCCUCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 16583 | 0.7 | 0.607214 |
Target: 5'- -aGUUGuuGGUGggGggGGAGuCCGg- -3' miRNA: 3'- ugCGACggCCACuaCuuCCUC-GGCac -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 134113 | 0.69 | 0.648065 |
Target: 5'- -gGCUGCUGGUGugccgGAGuccGGGGCCGg- -3' miRNA: 3'- ugCGACGGCCACua---CUU---CCUCGGCac -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 3727 | 0.69 | 0.668446 |
Target: 5'- gGCGCUggguccggGCCGGcGgcGggGGAGCUGg- -3' miRNA: 3'- -UGCGA--------CGGCCaCuaCuuCCUCGGCac -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 99236 | 0.68 | 0.68871 |
Target: 5'- cCGCUGCaGGUcGUGGAGGcGCuCGUGa -3' miRNA: 3'- uGCGACGgCCAcUACUUCCuCG-GCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 128331 | 0.68 | 0.68871 |
Target: 5'- cACGUaGCCGGccagcgucagguUGAUGAGGGucuGCgCGUGg -3' miRNA: 3'- -UGCGaCGGCC------------ACUACUUCCu--CG-GCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 122212 | 0.68 | 0.718733 |
Target: 5'- gGCGCagccgUGCgCGGUG-UGcuucGAGGAGCUGUGc -3' miRNA: 3'- -UGCG-----ACG-GCCACuAC----UUCCUCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 1966 | 0.68 | 0.718733 |
Target: 5'- -aGgaGCCGGUGG---AGGGGCCGg- -3' miRNA: 3'- ugCgaCGGCCACUacuUCCUCGGCac -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 21389 | 0.67 | 0.748089 |
Target: 5'- cACGacgGCCGGcggGgcGAAGGGGCgGUGc -3' miRNA: 3'- -UGCga-CGGCCa--CuaCUUCCUCGgCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 126045 | 0.67 | 0.775602 |
Target: 5'- gGCGCcGCCgucggcaaGGUGGuccUGGgugccacGGGGGCCGUGa -3' miRNA: 3'- -UGCGaCGG--------CCACU---ACU-------UCCUCGGCAC- -5' |
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29624 | 5' | -57.6 | NC_006151.1 | + | 88813 | 0.67 | 0.776532 |
Target: 5'- aGCGC-GuCCGGUGGgcGAGGGAGgCGUu -3' miRNA: 3'- -UGCGaC-GGCCACUa-CUUCCUCgGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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