Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 43216 | 0.71 | 0.550613 |
|
Target: 5'- gGCGCUGCCGGgGggGAaaaggggcgacaccgGGGAGUgCGUGc -3' miRNA: 3'- -UGCGACGGCCaCuaCU---------------UCCUCG-GCAC- -5' |
|||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 87405 | 0.71 | 0.526823 |
|
Target: 5'- -aGCaGCCGGUGGUGGugcAGGcccagccgguGGCCGUGc -3' miRNA: 3'- ugCGaCGGCCACUACU---UCC----------UCGGCAC- -5' |
|||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 103809 | 0.72 | 0.469223 |
|
Target: 5'- cGCGCUGUCGGcgGccGUGgcGGcGGCCGUGg -3' miRNA: 3'- -UGCGACGGCCa-C--UACuuCC-UCGGCAC- -5' |
|||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 103902 | 0.73 | 0.427324 |
|
Target: 5'- gGCGCUGgaGGUGGcgcgcgcggccgccgUGGAGGAGCCGc- -3' miRNA: 3'- -UGCGACggCCACU---------------ACUUCCUCGGCac -5' |
|||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 13401 | 0.74 | 0.372899 |
|
Target: 5'- gACGC-GCCGGccaAUGggGGAGCCGg- -3' miRNA: 3'- -UGCGaCGGCCac-UACuuCCUCGGCac -5' |
|||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 13961 | 0.76 | 0.290921 |
|
Target: 5'- gACGC-GCCGGccAUGggGGAGCCGg- -3' miRNA: 3'- -UGCGaCGGCCacUACuuCCUCGGCac -5' |
|||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 49606 | 0.76 | 0.275672 |
|
Target: 5'- cGCGCUGCCGGUccuGGcggugcugcgcgagUGggGGugGGCCGUGg -3' miRNA: 3'- -UGCGACGGCCA---CU--------------ACuuCC--UCGGCAC- -5' |
|||||||
| 29624 | 5' | -57.6 | NC_006151.1 | + | 4583 | 1.08 | 0.001959 |
|
Target: 5'- cACGCUGCCGGUGAUGAAGGAGCCGUGg -3' miRNA: 3'- -UGCGACGGCCACUACUUCCUCGGCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home