miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29625 5' -58.1 NC_006151.1 + 16829 0.67 0.789405
Target:  5'- -uUGGGGGGuGugGGGGAUGcGGAGaGAu -3'
miRNA:   3'- cuGCUCCUC-CugCUCCUGCuCCUC-CU- -5'
29625 5' -58.1 NC_006151.1 + 27817 0.67 0.789405
Target:  5'- --gGGGGAGGG-GAGG--GGGGAGGAg -3'
miRNA:   3'- cugCUCCUCCUgCUCCugCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 43344 0.67 0.789405
Target:  5'- --aGAGGAGaagcGgGAGGGgGGGGGGGAg -3'
miRNA:   3'- cugCUCCUCc---UgCUCCUgCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 30330 0.67 0.789405
Target:  5'- aGAUGAGGAGGcgGCGGcGGcGCGAGGGcGcGAa -3'
miRNA:   3'- -CUGCUCCUCC--UGCU-CC-UGCUCCU-C-CU- -5'
29625 5' -58.1 NC_006151.1 + 40580 0.67 0.789405
Target:  5'- cGCGGcGGAGGGCucGG-CGGcGGAGGAu -3'
miRNA:   3'- cUGCU-CCUCCUGcuCCuGCU-CCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 103002 0.67 0.780383
Target:  5'- aGGCGGGcGAGGACGugagcacGGACGAGcGccucGGGGc -3'
miRNA:   3'- -CUGCUC-CUCCUGCu------CCUGCUC-C----UCCU- -5'
29625 5' -58.1 NC_006151.1 + 101212 0.67 0.780383
Target:  5'- cGCGAGGGccaGGCGuGGACGGGGcccggcGGGGg -3'
miRNA:   3'- cUGCUCCUc--CUGCuCCUGCUCC------UCCU- -5'
29625 5' -58.1 NC_006151.1 + 27558 0.67 0.780383
Target:  5'- gGGCuGGGcuGGGACGGGGGCcGGGuGGGu -3'
miRNA:   3'- -CUGcUCC--UCCUGCUCCUGcUCCuCCU- -5'
29625 5' -58.1 NC_006151.1 + 121652 0.67 0.771233
Target:  5'- cGCGGcGGAcGGGCGGGcGGaGGGGGGGAg -3'
miRNA:   3'- cUGCU-CCU-CCUGCUC-CUgCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 110533 0.67 0.771233
Target:  5'- gGACuuGGGGGACuuggGGGGACuuGGGGGGAu -3'
miRNA:   3'- -CUGcuCCUCCUG----CUCCUGc-UCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 80333 0.67 0.771233
Target:  5'- ---uGGGGGGACcGGGGCGAGGGcGGc -3'
miRNA:   3'- cugcUCCUCCUGcUCCUGCUCCU-CCu -5'
29625 5' -58.1 NC_006151.1 + 43914 0.67 0.771233
Target:  5'- --aGGGGAGG--GGGGAagagaGAGGAGGGa -3'
miRNA:   3'- cugCUCCUCCugCUCCUg----CUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 46100 0.67 0.761964
Target:  5'- -cCGAGGAGGuGCGcc-ACGAGGAGGc -3'
miRNA:   3'- cuGCUCCUCC-UGCuccUGCUCCUCCu -5'
29625 5' -58.1 NC_006151.1 + 42088 0.67 0.761031
Target:  5'- aAUGAGGGGGugGGGuuaugcaGAUcagGGGGAGGGg -3'
miRNA:   3'- cUGCUCCUCCugCUC-------CUG---CUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 72564 0.67 0.756349
Target:  5'- cGCGcGGGAGGGUGGGGGCGGGugacagagucgggguGAGGGg -3'
miRNA:   3'- cUGC-UCCUCCUGCUCCUGCUC---------------CUCCU- -5'
29625 5' -58.1 NC_006151.1 + 41309 0.67 0.752584
Target:  5'- aGGgGGGGGGGGgGGGGugGuGGuGGu -3'
miRNA:   3'- -CUgCUCCUCCUgCUCCugCuCCuCCu -5'
29625 5' -58.1 NC_006151.1 + 138619 0.68 0.743102
Target:  5'- cGGCGAGGAcgccgccggGGGCGcgccGGACuGGGAGGc -3'
miRNA:   3'- -CUGCUCCU---------CCUGCu---CCUGcUCCUCCu -5'
29625 5' -58.1 NC_006151.1 + 40086 0.68 0.743102
Target:  5'- gGGCGccGGGGccggccccgGCGAGGACGGGGAcucuguGGAg -3'
miRNA:   3'- -CUGCucCUCC---------UGCUCCUGCUCCU------CCU- -5'
29625 5' -58.1 NC_006151.1 + 16590 0.68 0.743102
Target:  5'- gGugGGGGGGGAgucCGGGGGaguccGGGGGAg -3'
miRNA:   3'- -CugCUCCUCCU---GCUCCUgcu--CCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 29789 0.68 0.743102
Target:  5'- --aGAGaGAGGA-GAGGGaGGGGAGGGg -3'
miRNA:   3'- cugCUC-CUCCUgCUCCUgCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.