miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29626 5' -58.7 NC_006151.1 + 723 0.73 0.355246
Target:  5'- -gGGGGUC-CGCGG-GCGggGGCUUCCGc -3'
miRNA:   3'- uaCCCCGGaGUGCCaCGU--UCGAAGGC- -5'
29626 5' -58.7 NC_006151.1 + 4039 0.73 0.33976
Target:  5'- -aGGcGGCCUCGCGGgcGCGGGCcccgUCCa -3'
miRNA:   3'- uaCC-CCGGAGUGCCa-CGUUCGa---AGGc -5'
29626 5' -58.7 NC_006151.1 + 4216 0.66 0.774884
Target:  5'- -gGGcGGCCggggCGCGG-GCGGGCgcgggcagCCGg -3'
miRNA:   3'- uaCC-CCGGa---GUGCCaCGUUCGaa------GGC- -5'
29626 5' -58.7 NC_006151.1 + 4369 0.66 0.765491
Target:  5'- -aGaGGGCCUCgACGGUcgccuccccggcGCGGGggUCCGc -3'
miRNA:   3'- uaC-CCCGGAG-UGCCA------------CGUUCgaAGGC- -5'
29626 5' -58.7 NC_006151.1 + 5114 0.68 0.625716
Target:  5'- gGUGGcGGCCcggCGCGG-GCGAGUggggcgCCGg -3'
miRNA:   3'- -UACC-CCGGa--GUGCCaCGUUCGaa----GGC- -5'
29626 5' -58.7 NC_006151.1 + 5257 0.67 0.666567
Target:  5'- -gGGGGCC-CGgGGggcggaggGCGAGCgggCCGg -3'
miRNA:   3'- uaCCCCGGaGUgCCa-------CGUUCGaa-GGC- -5'
29626 5' -58.7 NC_006151.1 + 7290 1.06 0.002051
Target:  5'- aAUGGGGCCUCACGGUGCAAGCUUCCGu -3'
miRNA:   3'- -UACCCCGGAGUGCCACGUUCGAAGGC- -5'
29626 5' -58.7 NC_006151.1 + 8610 0.66 0.774884
Target:  5'- -gGGGGCCggUGCgGGUGUGAGggUCCu -3'
miRNA:   3'- uaCCCCGGa-GUG-CCACGUUCgaAGGc -5'
29626 5' -58.7 NC_006151.1 + 10978 0.66 0.755979
Target:  5'- -gGuGGGUgUCACGGUG-GAGCgggCCGg -3'
miRNA:   3'- uaC-CCCGgAGUGCCACgUUCGaa-GGC- -5'
29626 5' -58.7 NC_006151.1 + 19294 0.72 0.413251
Target:  5'- -cGGGGCCa-GCGGcGCGGGCggCCGg -3'
miRNA:   3'- uaCCCCGGagUGCCaCGUUCGaaGGC- -5'
29626 5' -58.7 NC_006151.1 + 19504 0.72 0.430864
Target:  5'- -cGGGGCCUCGgGGacGCAGGCgcggCCc -3'
miRNA:   3'- uaCCCCGGAGUgCCa-CGUUCGaa--GGc -5'
29626 5' -58.7 NC_006151.1 + 21546 0.67 0.70697
Target:  5'- -cGGGGCCggggcCugGGccucgGCGAGCccgCCGa -3'
miRNA:   3'- uaCCCCGGa----GugCCa----CGUUCGaa-GGC- -5'
29626 5' -58.7 NC_006151.1 + 23971 0.67 0.686859
Target:  5'- -aGGGGCCUCucuggccacgACGGUGCGgaccacgaggAGC--CCGa -3'
miRNA:   3'- uaCCCCGGAG----------UGCCACGU----------UCGaaGGC- -5'
29626 5' -58.7 NC_006151.1 + 28261 0.67 0.716935
Target:  5'- -cGGGGCCUCACacgugggccccgGGgacGCGGGC--CCGg -3'
miRNA:   3'- uaCCCCGGAGUG------------CCa--CGUUCGaaGGC- -5'
29626 5' -58.7 NC_006151.1 + 38683 0.66 0.765491
Target:  5'- -gGGGGCC-C-CGGcGCAAGCg-CCGc -3'
miRNA:   3'- uaCCCCGGaGuGCCaCGUUCGaaGGC- -5'
29626 5' -58.7 NC_006151.1 + 52382 0.73 0.355246
Target:  5'- -cGGGGCC-CGCGGgggcgGCGGGCgccgCCGc -3'
miRNA:   3'- uaCCCCGGaGUGCCa----CGUUCGaa--GGC- -5'
29626 5' -58.7 NC_006151.1 + 53977 0.66 0.736639
Target:  5'- -cGGcGCCUcCGCGGgcgucgcgGCGAGCUcCCGg -3'
miRNA:   3'- uaCCcCGGA-GUGCCa-------CGUUCGAaGGC- -5'
29626 5' -58.7 NC_006151.1 + 63172 0.68 0.634919
Target:  5'- -cGGGGCCUuggggcgCACGGgGCcGGGCUcgCCGa -3'
miRNA:   3'- uaCCCCGGA-------GUGCCaCG-UUCGAa-GGC- -5'
29626 5' -58.7 NC_006151.1 + 65044 0.68 0.615495
Target:  5'- -gGGGGCCcgGCGGcgGCGGGCgcCCGu -3'
miRNA:   3'- uaCCCCGGagUGCCa-CGUUCGaaGGC- -5'
29626 5' -58.7 NC_006151.1 + 65717 0.69 0.564725
Target:  5'- -gGGGGCCUCgcGCGGcUGCGcGCggCCc -3'
miRNA:   3'- uaCCCCGGAG--UGCC-ACGUuCGaaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.