miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29627 3' -54.8 NC_006151.1 + 96496 0.66 0.948423
Target:  5'- aCCAGCuuGCCgcaggcCACguacaCGCGCUCgUCCa -3'
miRNA:   3'- -GGUUGu-CGGa-----GUGaga--GCGCGAG-AGG- -5'
29627 3' -54.8 NC_006151.1 + 96406 0.66 0.948423
Target:  5'- aCGGCGGCCgccacCGCggggaUCaGCGCgagCUCCg -3'
miRNA:   3'- gGUUGUCGGa----GUGag---AG-CGCGa--GAGG- -5'
29627 3' -54.8 NC_006151.1 + 137315 0.66 0.948423
Target:  5'- gCCGcGCGGUgCUCgACgcgCUCGCGCUgCUCUu -3'
miRNA:   3'- -GGU-UGUCG-GAG-UGa--GAGCGCGA-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 37197 0.66 0.948423
Target:  5'- gCCcuCGGCCUC-CUC-CGC-CUcCUCCu -3'
miRNA:   3'- -GGuuGUCGGAGuGAGaGCGcGA-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 141488 0.66 0.948423
Target:  5'- uCCGAgAGCCUcCGCggcgaCGgGCgUCUCCa -3'
miRNA:   3'- -GGUUgUCGGA-GUGaga--GCgCG-AGAGG- -5'
29627 3' -54.8 NC_006151.1 + 114067 0.66 0.94403
Target:  5'- gCCGACAacuGCCugUCGCUCUCGgGCa---- -3'
miRNA:   3'- -GGUUGU---CGG--AGUGAGAGCgCGagagg -5'
29627 3' -54.8 NC_006151.1 + 28120 0.66 0.94403
Target:  5'- uCCucguCGGCUcggggcgCGCUC-CGCGCcUCUCCc -3'
miRNA:   3'- -GGuu--GUCGGa------GUGAGaGCGCG-AGAGG- -5'
29627 3' -54.8 NC_006151.1 + 56674 0.66 0.939401
Target:  5'- aCGACGGCgC-CGCg--CGCGCUCaCCg -3'
miRNA:   3'- gGUUGUCG-GaGUGagaGCGCGAGaGG- -5'
29627 3' -54.8 NC_006151.1 + 39479 0.66 0.939401
Target:  5'- cCCGGguGCCgcgaGCUC-CGCGCgg-CCg -3'
miRNA:   3'- -GGUUguCGGag--UGAGaGCGCGagaGG- -5'
29627 3' -54.8 NC_006151.1 + 133286 0.66 0.939401
Target:  5'- gCGGCGGCC-CACg-UCGagGUUCUCCc -3'
miRNA:   3'- gGUUGUCGGaGUGagAGCg-CGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 72110 0.66 0.934532
Target:  5'- gCGGCAGCgUCAUggggaaGCGCagCUCCa -3'
miRNA:   3'- gGUUGUCGgAGUGagag--CGCGa-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 66724 0.66 0.934532
Target:  5'- gUCAACcGCUUCGCgCUCcugucgcgGCGCUCcuUCCg -3'
miRNA:   3'- -GGUUGuCGGAGUGaGAG--------CGCGAG--AGG- -5'
29627 3' -54.8 NC_006151.1 + 65838 0.66 0.934532
Target:  5'- gCCAgcGCGGCCcggcUCACgccucCUC-CGCUcCUCCa -3'
miRNA:   3'- -GGU--UGUCGG----AGUGa----GAGcGCGA-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 100123 0.66 0.929944
Target:  5'- gCCAGC-GCCUUcCUCggggaccugcuggcaCGCGCcCUCCg -3'
miRNA:   3'- -GGUUGuCGGAGuGAGa--------------GCGCGaGAGG- -5'
29627 3' -54.8 NC_006151.1 + 109573 0.66 0.929422
Target:  5'- gCCGAgggacucugcCGGCC-CGC-C-CGCGCUCUUCa -3'
miRNA:   3'- -GGUU----------GUCGGaGUGaGaGCGCGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 84160 0.66 0.924071
Target:  5'- gCCAGCuGCgCg-ACUCggCGCGC-CUCCu -3'
miRNA:   3'- -GGUUGuCG-GagUGAGa-GCGCGaGAGG- -5'
29627 3' -54.8 NC_006151.1 + 12070 0.66 0.924071
Target:  5'- uUCGGCcccGGCCUCcccgaccuCUCUCacccgcccucccGCGCUCUCUu -3'
miRNA:   3'- -GGUUG---UCGGAGu-------GAGAG------------CGCGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 85589 0.66 0.924071
Target:  5'- gCAACAaCUUCcaGCUCggCGCGCUCgugCCc -3'
miRNA:   3'- gGUUGUcGGAG--UGAGa-GCGCGAGa--GG- -5'
29627 3' -54.8 NC_006151.1 + 100670 0.67 0.918478
Target:  5'- gCGGCGuGCUggCGCUCgUCGCGacgCUCCg -3'
miRNA:   3'- gGUUGU-CGGa-GUGAG-AGCGCga-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 66517 0.67 0.918478
Target:  5'- uUCGcCGGgCUCGCgcgcgC-CGCGCUCUUCg -3'
miRNA:   3'- -GGUuGUCgGAGUGa----GaGCGCGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.