Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29627 | 3' | -54.8 | NC_006151.1 | + | 4036 | 0.68 | 0.886944 |
Target: 5'- uCCAgGCGGCCUCGCgggCGCGggCcCCg -3' miRNA: 3'- -GGU-UGUCGGAGUGagaGCGCgaGaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 106129 | 0.68 | 0.88417 |
Target: 5'- --cGCGGCCgugcuggccacgaCGCUCUCGCGCacCUUCg -3' miRNA: 3'- gguUGUCGGa------------GUGAGAGCGCGa-GAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 88355 | 0.68 | 0.879942 |
Target: 5'- aCCAcACGGCCUCGCagcgcaggCUCGgCGCgagcgCgUCCg -3' miRNA: 3'- -GGU-UGUCGGAGUGa-------GAGC-GCGa----G-AGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 125473 | 0.68 | 0.879942 |
Target: 5'- gCC-ACGGCCgCGCUCggccaGCGCgUCUCg -3' miRNA: 3'- -GGuUGUCGGaGUGAGag---CGCG-AGAGg -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 50442 | 0.68 | 0.872717 |
Target: 5'- gCCGGCGGCCUgggCACcgcccgCggGCGCUCgcgCCa -3' miRNA: 3'- -GGUUGUCGGA---GUGa-----GagCGCGAGa--GG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 104981 | 0.69 | 0.806729 |
Target: 5'- gCCGcCGGCCUCGCUCaacaUCGaccgggcCGC-CUCCg -3' miRNA: 3'- -GGUuGUCGGAGUGAG----AGC-------GCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 135916 | 0.69 | 0.807617 |
Target: 5'- cCCGGCGGUCgUGCg--CGCGCUCUgCCg -3' miRNA: 3'- -GGUUGUCGGaGUGagaGCGCGAGA-GG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 39162 | 0.69 | 0.816399 |
Target: 5'- gCGGCGGCCUCucggcGCUgCUCGcCGC-CUUCg -3' miRNA: 3'- gGUUGUCGGAG-----UGA-GAGC-GCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 59502 | 0.69 | 0.816399 |
Target: 5'- cCCGGCGGCCUcCGCgacgCGCGCgcagCgCCg -3' miRNA: 3'- -GGUUGUCGGA-GUGaga-GCGCGa---GaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 87543 | 0.69 | 0.825013 |
Target: 5'- cCCAGCcgcccguccaGGCCUCGgUCUCG-GCcccggcggacgUCUCCg -3' miRNA: 3'- -GGUUG----------UCGGAGUgAGAGCgCG-----------AGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 35851 | 0.69 | 0.833449 |
Target: 5'- uCC-GCcGCC-CGCUCUcCGCGCUCggcgCCc -3' miRNA: 3'- -GGuUGuCGGaGUGAGA-GCGCGAGa---GG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 31588 | 0.69 | 0.841701 |
Target: 5'- -gGGCGGCg-CGCUC-CGCGCUCcCCc -3' miRNA: 3'- ggUUGUCGgaGUGAGaGCGCGAGaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 66246 | 0.7 | 0.750889 |
Target: 5'- cUCGACGgugcgcGCCUugaagaCGCUCUCGCGCUgaaaggcCUCCu -3' miRNA: 3'- -GGUUGU------CGGA------GUGAGAGCGCGA-------GAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 131408 | 0.7 | 0.751856 |
Target: 5'- uCCAgACGGgcuCCUC-CUcCUCGCuGCUCUCCu -3' miRNA: 3'- -GGU-UGUC---GGAGuGA-GAGCG-CGAGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 37132 | 0.7 | 0.760513 |
Target: 5'- cCCGGC-GCCcCACUCgccCGCGCcgggccgccaccgUCUCCg -3' miRNA: 3'- -GGUUGuCGGaGUGAGa--GCGCG-------------AGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 92675 | 0.7 | 0.770967 |
Target: 5'- gCCGGCGGCCggggacgcgCGCUCgcCGCGCg--CCg -3' miRNA: 3'- -GGUUGUCGGa--------GUGAGa-GCGCGagaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 68901 | 0.7 | 0.798673 |
Target: 5'- -gGACGGCCUCGCggUCGCGCg---- -3' miRNA: 3'- ggUUGUCGGAGUGagAGCGCGagagg -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 139255 | 0.71 | 0.73232 |
Target: 5'- gCGACGGCCaCGC-C-CGCGCgCUCCg -3' miRNA: 3'- gGUUGUCGGaGUGaGaGCGCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 117285 | 0.71 | 0.722415 |
Target: 5'- gCCGACAGCgCgcgCGCgagcugCUCgGCGCUCgCCa -3' miRNA: 3'- -GGUUGUCG-Ga--GUGa-----GAG-CGCGAGaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 64405 | 0.72 | 0.689225 |
Target: 5'- gCAGCAGCguccacaggucgcuCUCGCUCUgCGCGCgcguggccgcCUCCa -3' miRNA: 3'- gGUUGUCG--------------GAGUGAGA-GCGCGa---------GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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