Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29627 | 3' | -54.8 | NC_006151.1 | + | 114067 | 0.66 | 0.94403 |
Target: 5'- gCCGACAacuGCCugUCGCUCUCGgGCa---- -3' miRNA: 3'- -GGUUGU---CGG--AGUGAGAGCgCGagagg -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 37197 | 0.66 | 0.948423 |
Target: 5'- gCCcuCGGCCUC-CUC-CGC-CUcCUCCu -3' miRNA: 3'- -GGuuGUCGGAGuGAGaGCGcGA-GAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 137315 | 0.66 | 0.948423 |
Target: 5'- gCCGcGCGGUgCUCgACgcgCUCGCGCUgCUCUu -3' miRNA: 3'- -GGU-UGUCG-GAG-UGa--GAGCGCGA-GAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 96406 | 0.66 | 0.948423 |
Target: 5'- aCGGCGGCCgccacCGCggggaUCaGCGCgagCUCCg -3' miRNA: 3'- gGUUGUCGGa----GUGag---AG-CGCGa--GAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 96496 | 0.66 | 0.948423 |
Target: 5'- aCCAGCuuGCCgcaggcCACguacaCGCGCUCgUCCa -3' miRNA: 3'- -GGUUGu-CGGa-----GUGaga--GCGCGAG-AGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 109573 | 0.66 | 0.929422 |
Target: 5'- gCCGAgggacucugcCGGCC-CGC-C-CGCGCUCUUCa -3' miRNA: 3'- -GGUU----------GUCGGaGUGaGaGCGCGAGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 84160 | 0.66 | 0.924071 |
Target: 5'- gCCAGCuGCgCg-ACUCggCGCGC-CUCCu -3' miRNA: 3'- -GGUUGuCG-GagUGAGa-GCGCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 122796 | 0.67 | 0.89372 |
Target: 5'- --cGCGGCCUCGCccgacgagcgccUCgagGCGCUCaUCCg -3' miRNA: 3'- gguUGUCGGAGUG------------AGag-CGCGAG-AGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 36433 | 0.67 | 0.900263 |
Target: 5'- cCCGGCcuCCUC-CUC-CG-GCUCUCCc -3' miRNA: 3'- -GGUUGucGGAGuGAGaGCgCGAGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 132484 | 0.67 | 0.906573 |
Target: 5'- uCCAGCAGgCgcgcguagCGCUcCUCGCGCgC-CCg -3' miRNA: 3'- -GGUUGUCgGa-------GUGA-GAGCGCGaGaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 116374 | 0.67 | 0.906573 |
Target: 5'- uCCAGgucCAGCUUgCGCUCgccgaGCGC-CUCCu -3' miRNA: 3'- -GGUU---GUCGGA-GUGAGag---CGCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 67662 | 0.67 | 0.912645 |
Target: 5'- aCAGCacgcggaagaGGCCcgagUCGCUCgCGCGCagCUCCc -3' miRNA: 3'- gGUUG----------UCGG----AGUGAGaGCGCGa-GAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 35702 | 0.67 | 0.912645 |
Target: 5'- uCCGACcGUCUcCGCUCcggCGCGgaCUCUg -3' miRNA: 3'- -GGUUGuCGGA-GUGAGa--GCGCgaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 91610 | 0.67 | 0.917906 |
Target: 5'- aCCAGCAuGCCggugCGCUgcaggggCUCGCcGUcCUCCa -3' miRNA: 3'- -GGUUGU-CGGa---GUGA-------GAGCG-CGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 20745 | 0.67 | 0.918478 |
Target: 5'- aCAGCAGCCgg-----CGCGC-CUCCa -3' miRNA: 3'- gGUUGUCGGagugagaGCGCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 47200 | 0.67 | 0.918478 |
Target: 5'- -aGGgAGUCUgGCUCUCGgGgCUCUCg -3' miRNA: 3'- ggUUgUCGGAgUGAGAGCgC-GAGAGg -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 66517 | 0.67 | 0.918478 |
Target: 5'- uUCGcCGGgCUCGCgcgcgC-CGCGCUCUUCg -3' miRNA: 3'- -GGUuGUCgGAGUGa----GaGCGCGAGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 100670 | 0.67 | 0.918478 |
Target: 5'- gCGGCGuGCUggCGCUCgUCGCGacgCUCCg -3' miRNA: 3'- gGUUGU-CGGa-GUGAG-AGCGCga-GAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 85589 | 0.66 | 0.924071 |
Target: 5'- gCAACAaCUUCcaGCUCggCGCGCUCgugCCc -3' miRNA: 3'- gGUUGUcGGAG--UGAGa-GCGCGAGa--GG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 12070 | 0.66 | 0.924071 |
Target: 5'- uUCGGCcccGGCCUCcccgaccuCUCUCacccgcccucccGCGCUCUCUu -3' miRNA: 3'- -GGUUG---UCGGAGu-------GAGAG------------CGCGAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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