miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29627 3' -54.8 NC_006151.1 + 141488 0.66 0.948423
Target:  5'- uCCGAgAGCCUcCGCggcgaCGgGCgUCUCCa -3'
miRNA:   3'- -GGUUgUCGGA-GUGaga--GCgCG-AGAGG- -5'
29627 3' -54.8 NC_006151.1 + 139255 0.71 0.73232
Target:  5'- gCGACGGCCaCGC-C-CGCGCgCUCCg -3'
miRNA:   3'- gGUUGUCGGaGUGaGaGCGCGaGAGG- -5'
29627 3' -54.8 NC_006151.1 + 139222 0.68 0.857621
Target:  5'- gCGACGcuGCCgCACaUCgCGCGCgUCUCCg -3'
miRNA:   3'- gGUUGU--CGGaGUG-AGaGCGCG-AGAGG- -5'
29627 3' -54.8 NC_006151.1 + 137761 0.68 0.857621
Target:  5'- uCC-GCGGCCUgGCg--CGCGUgCUCCa -3'
miRNA:   3'- -GGuUGUCGGAgUGagaGCGCGaGAGG- -5'
29627 3' -54.8 NC_006151.1 + 137315 0.66 0.948423
Target:  5'- gCCGcGCGGUgCUCgACgcgCUCGCGCUgCUCUu -3'
miRNA:   3'- -GGU-UGUCG-GAG-UGa--GAGCGCGA-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 136346 0.77 0.413031
Target:  5'- cCCAGCGGCCUggaccccgcggggcUGCUCUCguucgcgGCGCUCUCg -3'
miRNA:   3'- -GGUUGUCGGA--------------GUGAGAG-------CGCGAGAGg -5'
29627 3' -54.8 NC_006151.1 + 135916 0.69 0.807617
Target:  5'- cCCGGCGGUCgUGCg--CGCGCUCUgCCg -3'
miRNA:   3'- -GGUUGUCGGaGUGagaGCGCGAGA-GG- -5'
29627 3' -54.8 NC_006151.1 + 133286 0.66 0.939401
Target:  5'- gCGGCGGCC-CACg-UCGagGUUCUCCc -3'
miRNA:   3'- gGUUGUCGGaGUGagAGCg-CGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 132484 0.67 0.906573
Target:  5'- uCCAGCAGgCgcgcguagCGCUcCUCGCGCgC-CCg -3'
miRNA:   3'- -GGUUGUCgGa-------GUGA-GAGCGCGaGaGG- -5'
29627 3' -54.8 NC_006151.1 + 131408 0.7 0.751856
Target:  5'- uCCAgACGGgcuCCUC-CUcCUCGCuGCUCUCCu -3'
miRNA:   3'- -GGU-UGUC---GGAGuGA-GAGCG-CGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 125473 0.68 0.879942
Target:  5'- gCC-ACGGCCgCGCUCggccaGCGCgUCUCg -3'
miRNA:   3'- -GGuUGUCGGaGUGAGag---CGCG-AGAGg -5'
29627 3' -54.8 NC_006151.1 + 122796 0.67 0.89372
Target:  5'- --cGCGGCCUCGCccgacgagcgccUCgagGCGCUCaUCCg -3'
miRNA:   3'- gguUGUCGGAGUG------------AGag-CGCGAG-AGG- -5'
29627 3' -54.8 NC_006151.1 + 122690 0.77 0.390693
Target:  5'- gCGGCGGCCguggagCUCGCGCUCUUCg -3'
miRNA:   3'- gGUUGUCGGaguga-GAGCGCGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 117285 0.71 0.722415
Target:  5'- gCCGACAGCgCgcgCGCgagcugCUCgGCGCUCgCCa -3'
miRNA:   3'- -GGUUGUCG-Ga--GUGa-----GAG-CGCGAGaGG- -5'
29627 3' -54.8 NC_006151.1 + 116374 0.67 0.906573
Target:  5'- uCCAGgucCAGCUUgCGCUCgccgaGCGC-CUCCu -3'
miRNA:   3'- -GGUU---GUCGGA-GUGAGag---CGCGaGAGG- -5'
29627 3' -54.8 NC_006151.1 + 115771 0.74 0.559319
Target:  5'- uCCAgcagcACGGCCUC-CUCgggCGCGCUCgUCg -3'
miRNA:   3'- -GGU-----UGUCGGAGuGAGa--GCGCGAG-AGg -5'
29627 3' -54.8 NC_006151.1 + 114067 0.66 0.94403
Target:  5'- gCCGACAacuGCCugUCGCUCUCGgGCa---- -3'
miRNA:   3'- -GGUUGU---CGG--AGUGAGAGCgCGagagg -5'
29627 3' -54.8 NC_006151.1 + 113815 0.68 0.84976
Target:  5'- gCC-ACGGCCUCGCgCUCGU-CUC-CCu -3'
miRNA:   3'- -GGuUGUCGGAGUGaGAGCGcGAGaGG- -5'
29627 3' -54.8 NC_006151.1 + 109573 0.66 0.929422
Target:  5'- gCCGAgggacucugcCGGCC-CGC-C-CGCGCUCUUCa -3'
miRNA:   3'- -GGUU----------GUCGGaGUGaGaGCGCGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 106129 0.68 0.88417
Target:  5'- --cGCGGCCgugcuggccacgaCGCUCUCGCGCacCUUCg -3'
miRNA:   3'- gguUGUCGGa------------GUGAGAGCGCGa-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.