miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29627 5' -50.2 NC_006151.1 + 38609 0.66 0.995412
Target:  5'- cGAGGAGGACGaggggcucucCGGCGCgGCccuccGCGGGg -3'
miRNA:   3'- -CUUUUUUUGU----------GCCGUGgUGuc---CGCCC- -5'
29627 5' -50.2 NC_006151.1 + 36573 0.66 0.995412
Target:  5'- -------cCGCaGCGCCgGCAcGGCGGGg -3'
miRNA:   3'- cuuuuuuuGUGcCGUGG-UGU-CCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 31239 0.66 0.995412
Target:  5'- -----cGGCcCGGCGagcgaGCGGGCGGGc -3'
miRNA:   3'- cuuuuuUUGuGCCGUgg---UGUCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 3139 0.66 0.995412
Target:  5'- ------cGCGgGGCGCCcucGGCGGGc -3'
miRNA:   3'- cuuuuuuUGUgCCGUGGuguCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 2783 0.66 0.995412
Target:  5'- -cGGAGcuCGCGGCACC-CGGGCc-- -3'
miRNA:   3'- cuUUUUuuGUGCCGUGGuGUCCGccc -5'
29627 5' -50.2 NC_006151.1 + 136973 0.66 0.995412
Target:  5'- ---uGGAGCugGcCGCCGCGccgggcGGCGGGc -3'
miRNA:   3'- cuuuUUUUGugCcGUGGUGU------CCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 55538 0.66 0.995412
Target:  5'- -------uCACGcGCGCCAUGGGCGa- -3'
miRNA:   3'- cuuuuuuuGUGC-CGUGGUGUCCGCcc -5'
29627 5' -50.2 NC_006151.1 + 58998 0.66 0.995412
Target:  5'- --cGAGAGCGCGGCGuCCAgCGGcGCGu- -3'
miRNA:   3'- cuuUUUUUGUGCCGU-GGU-GUC-CGCcc -5'
29627 5' -50.2 NC_006151.1 + 68043 0.66 0.995412
Target:  5'- ------cGC-CGGCGCgGCGGGCacGGGc -3'
miRNA:   3'- cuuuuuuUGuGCCGUGgUGUCCG--CCC- -5'
29627 5' -50.2 NC_006151.1 + 66783 0.66 0.995412
Target:  5'- ---cGGGACgGCGGCgGCgGC-GGCGGGg -3'
miRNA:   3'- cuuuUUUUG-UGCCG-UGgUGuCCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 133502 0.66 0.995412
Target:  5'- --------gGCGGCGCgGgGGGCGcGGg -3'
miRNA:   3'- cuuuuuuugUGCCGUGgUgUCCGC-CC- -5'
29627 5' -50.2 NC_006151.1 + 81802 0.66 0.995412
Target:  5'- -cGAAGAGCcCGGCGaaGCccGCGGGg -3'
miRNA:   3'- cuUUUUUUGuGCCGUggUGucCGCCC- -5'
29627 5' -50.2 NC_006151.1 + 90793 0.66 0.995412
Target:  5'- aGAAGAAGAaggUGGUcgcccgcaccgGCCGCAGGUGGu -3'
miRNA:   3'- -CUUUUUUUgu-GCCG-----------UGGUGUCCGCCc -5'
29627 5' -50.2 NC_006151.1 + 68898 0.66 0.995412
Target:  5'- cGAGGAcgGCcucGCGGUcgCGCGGGCGGa -3'
miRNA:   3'- -CUUUUuuUG---UGCCGugGUGUCCGCCc -5'
29627 5' -50.2 NC_006151.1 + 66293 0.66 0.995412
Target:  5'- cGAGGcGcACGCGGCGCUcCcGGCGGu -3'
miRNA:   3'- -CUUUuUuUGUGCCGUGGuGuCCGCCc -5'
29627 5' -50.2 NC_006151.1 + 65725 0.66 0.995412
Target:  5'- ------cGCGCGGCugCGCGcGGCccaggagccGGGa -3'
miRNA:   3'- cuuuuuuUGUGCCGugGUGU-CCG---------CCC- -5'
29627 5' -50.2 NC_006151.1 + 89812 0.66 0.994964
Target:  5'- cGAGAAGACAgGGCgaagagcgcgaugcuGCCGgcgUAGGCGuGGg -3'
miRNA:   3'- cUUUUUUUGUgCCG---------------UGGU---GUCCGC-CC- -5'
29627 5' -50.2 NC_006151.1 + 99569 0.66 0.994647
Target:  5'- ------cGCGCGGCGCUGCugcgcgagguGGCGGcGg -3'
miRNA:   3'- cuuuuuuUGUGCCGUGGUGu---------CCGCC-C- -5'
29627 5' -50.2 NC_006151.1 + 94760 0.66 0.994647
Target:  5'- --cGGAAACA-GGCGCCGCAGcgucuccaugaGCGGc -3'
miRNA:   3'- cuuUUUUUGUgCCGUGGUGUC-----------CGCCc -5'
29627 5' -50.2 NC_006151.1 + 94379 0.66 0.994647
Target:  5'- -----cAugGCGcGCGCuCACAGGUGGc -3'
miRNA:   3'- cuuuuuUugUGC-CGUG-GUGUCCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.