miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29628 3' -48.2 NC_006151.1 + 22499 0.66 0.998856
Target:  5'- -cACCcgguGAGAGAGGGGGGgaaucgcgGGGGAGUc -3'
miRNA:   3'- aaUGG----CUCUCUCCUCUUa-------UUCUUCGu -5'
29628 3' -48.2 NC_006151.1 + 32974 0.66 0.998856
Target:  5'- -gACgGGGAGAGcgcGAGAGUGAGGcuguuGGCu -3'
miRNA:   3'- aaUGgCUCUCUC---CUCUUAUUCU-----UCGu -5'
29628 3' -48.2 NC_006151.1 + 42882 0.66 0.998602
Target:  5'- -gGCCGcgagGGAGAGGGGGuuaGAGGAGa- -3'
miRNA:   3'- aaUGGC----UCUCUCCUCUua-UUCUUCgu -5'
29628 3' -48.2 NC_006151.1 + 41302 0.66 0.998602
Target:  5'- gUGCgUGAGGGGGGGGGG-GGGggGUg -3'
miRNA:   3'- aAUG-GCUCUCUCCUCUUaUUCuuCGu -5'
29628 3' -48.2 NC_006151.1 + 122431 0.66 0.998602
Target:  5'- -cGCCGAGGcccGGGAGGc--GGAGGCGg -3'
miRNA:   3'- aaUGGCUCUc--UCCUCUuauUCUUCGU- -5'
29628 3' -48.2 NC_006151.1 + 101938 0.66 0.998302
Target:  5'- -gGCCGGcGAGccAGGAGGAccUGAGcAGCAc -3'
miRNA:   3'- aaUGGCU-CUC--UCCUCUU--AUUCuUCGU- -5'
29628 3' -48.2 NC_006151.1 + 37102 0.66 0.998302
Target:  5'- --uCCGAGGGAGaAGAAgacgAAGGAGUc -3'
miRNA:   3'- aauGGCUCUCUCcUCUUa---UUCUUCGu -5'
29628 3' -48.2 NC_006151.1 + 12318 0.66 0.998098
Target:  5'- -gGCCagGAGAGAuggauggauggauugGGGGAAgGAGggGCGg -3'
miRNA:   3'- aaUGG--CUCUCU---------------CCUCUUaUUCuuCGU- -5'
29628 3' -48.2 NC_006151.1 + 30410 0.66 0.99795
Target:  5'- -gACgGGGAGAGGaAGGAgGGGAGGaCGg -3'
miRNA:   3'- aaUGgCUCUCUCC-UCUUaUUCUUC-GU- -5'
29628 3' -48.2 NC_006151.1 + 84727 0.66 0.997793
Target:  5'- -gGCCGAGGcgcucguggugcucGAGGAGAcgGcgcgcgccgccgaGGAGGCGg -3'
miRNA:   3'- aaUGGCUCU--------------CUCCUCUuaU-------------UCUUCGU- -5'
29628 3' -48.2 NC_006151.1 + 89123 0.67 0.997538
Target:  5'- -gACCGAGGGcGGcGGGAccGGggGCGu -3'
miRNA:   3'- aaUGGCUCUCuCC-UCUUauUCuuCGU- -5'
29628 3' -48.2 NC_006151.1 + 41859 0.67 0.997538
Target:  5'- -aAUgGGGGGGGGGGG--GAGGAGCc -3'
miRNA:   3'- aaUGgCUCUCUCCUCUuaUUCUUCGu -5'
29628 3' -48.2 NC_006151.1 + 91054 0.67 0.997538
Target:  5'- --cCCGGcgcuGGAGGAGAcgGAGAAGUc -3'
miRNA:   3'- aauGGCUc---UCUCCUCUuaUUCUUCGu -5'
29628 3' -48.2 NC_006151.1 + 37509 0.67 0.99706
Target:  5'- --cCCG-GAGAuGGGGGAcucgAGGAAGCAg -3'
miRNA:   3'- aauGGCuCUCU-CCUCUUa---UUCUUCGU- -5'
29628 3' -48.2 NC_006151.1 + 66911 0.67 0.99706
Target:  5'- -cGCCGAG-GAGGgccacgauGGAGgcGGggGCGa -3'
miRNA:   3'- aaUGGCUCuCUCC--------UCUUauUCuuCGU- -5'
29628 3' -48.2 NC_006151.1 + 49536 0.67 0.99706
Target:  5'- ----gGGGGGAGGGGggUGGGAuggacggaggagAGCGg -3'
miRNA:   3'- aauggCUCUCUCCUCuuAUUCU------------UCGU- -5'
29628 3' -48.2 NC_006151.1 + 66808 0.67 0.996325
Target:  5'- --cCCGGGGacgacgacggcgacGAGGAGGAUGGGggGgAa -3'
miRNA:   3'- aauGGCUCU--------------CUCCUCUUAUUCuuCgU- -5'
29628 3' -48.2 NC_006151.1 + 80731 0.67 0.99587
Target:  5'- -aACCGAGAauagcccucgGAGGAGAAgcugcaGAGCAu -3'
miRNA:   3'- aaUGGCUCU----------CUCCUCUUauuc--UUCGU- -5'
29628 3' -48.2 NC_006151.1 + 9969 0.68 0.994313
Target:  5'- -gGCgGAG-GAGGAGAAgaagGAGAGGa- -3'
miRNA:   3'- aaUGgCUCuCUCCUCUUa---UUCUUCgu -5'
29628 3' -48.2 NC_006151.1 + 835 0.68 0.994313
Target:  5'- -gGCUGGGAGuGGGGAcgGaagacGGAAGCc -3'
miRNA:   3'- aaUGGCUCUCuCCUCUuaU-----UCUUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.