Results 1 - 20 of 78 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 122431 | 0.66 | 0.998602 |
Target: 5'- -cGCCGAGGcccGGGAGGc--GGAGGCGg -3' miRNA: 3'- aaUGGCUCUc--UCCUCUuauUCUUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 121545 | 0.73 | 0.906375 |
Target: 5'- aUGCUGuGAGGGGAGGAggagGGGAAGgGg -3' miRNA: 3'- aAUGGCuCUCUCCUCUUa---UUCUUCgU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 101938 | 0.66 | 0.998302 |
Target: 5'- -gGCCGGcGAGccAGGAGGAccUGAGcAGCAc -3' miRNA: 3'- aaUGGCU-CUC--UCCUCUU--AUUCuUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 96710 | 0.69 | 0.98485 |
Target: 5'- -cGCCGGGGGcGGcggcGGAcgAGGAGGCGg -3' miRNA: 3'- aaUGGCUCUCuCC----UCUuaUUCUUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 93416 | 0.77 | 0.716588 |
Target: 5'- uUUGCCgcagaGAGAGAGGAGGA-GGGggGCGa -3' miRNA: 3'- -AAUGG-----CUCUCUCCUCUUaUUCuuCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 91054 | 0.67 | 0.997538 |
Target: 5'- --cCCGGcgcuGGAGGAGAcgGAGAAGUc -3' miRNA: 3'- aauGGCUc---UCUCCUCUuaUUCUUCGu -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 89602 | 0.7 | 0.978267 |
Target: 5'- -gGCCGuGAGGacgauggccGcGAGGAUGAGGAGCGu -3' miRNA: 3'- aaUGGCuCUCU---------C-CUCUUAUUCUUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 89123 | 0.67 | 0.997538 |
Target: 5'- -gACCGAGGGcGGcGGGAccGGggGCGu -3' miRNA: 3'- aaUGGCUCUCuCC-UCUUauUCuuCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 84727 | 0.66 | 0.997793 |
Target: 5'- -gGCCGAGGcgcucguggugcucGAGGAGAcgGcgcgcgccgccgaGGAGGCGg -3' miRNA: 3'- aaUGGCUCU--------------CUCCUCUuaU-------------UCUUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 80731 | 0.67 | 0.99587 |
Target: 5'- -aACCGAGAauagcccucgGAGGAGAAgcugcaGAGCAu -3' miRNA: 3'- aaUGGCUCU----------CUCCUCUUauuc--UUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 71548 | 0.74 | 0.885189 |
Target: 5'- aUUugCGAGGGAGGGGGGggcgAGGggGaCGg -3' miRNA: 3'- -AAugGCUCUCUCCUCUUa---UUCuuC-GU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 66911 | 0.67 | 0.99706 |
Target: 5'- -cGCCGAG-GAGGgccacgauGGAGgcGGggGCGa -3' miRNA: 3'- aaUGGCUCuCUCC--------UCUUauUCuuCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 66808 | 0.67 | 0.996325 |
Target: 5'- --cCCGGGGacgacgacggcgacGAGGAGGAUGGGggGgAa -3' miRNA: 3'- aauGGCUCU--------------CUCCUCUUAUUCuuCgU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 49536 | 0.67 | 0.99706 |
Target: 5'- ----gGGGGGAGGGGggUGGGAuggacggaggagAGCGg -3' miRNA: 3'- aauggCUCUCUCCUCuuAUUCU------------UCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 45316 | 0.74 | 0.869755 |
Target: 5'- -gGCCGGGAGgcuGGGAGggUGgcgguggaggacGGGAGCGu -3' miRNA: 3'- aaUGGCUCUC---UCCUCuuAU------------UCUUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 44776 | 0.68 | 0.989793 |
Target: 5'- -cGCgGAGAGAGcGGGG---AGAAGCGg -3' miRNA: 3'- aaUGgCUCUCUC-CUCUuauUCUUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 43924 | 0.74 | 0.869755 |
Target: 5'- -gGaaGAGAGAGGAGGGaGAGggGCc -3' miRNA: 3'- aaUggCUCUCUCCUCUUaUUCuuCGu -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 43331 | 0.72 | 0.941336 |
Target: 5'- -cGCCG-GAGAGGAaagagGAGAAGCGg -3' miRNA: 3'- aaUGGCuCUCUCCUcuua-UUCUUCGU- -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 42882 | 0.66 | 0.998602 |
Target: 5'- -gGCCGcgagGGAGAGGGGGuuaGAGGAGa- -3' miRNA: 3'- aaUGGC----UCUCUCCUCUua-UUCUUCgu -5' |
|||||||
29628 | 3' | -48.2 | NC_006151.1 | + | 41859 | 0.67 | 0.997538 |
Target: 5'- -aAUgGGGGGGGGGGG--GAGGAGCc -3' miRNA: 3'- aaUGgCUCUCUCCUCUuaUUCUUCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home