miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29628 5' -64.1 NC_006151.1 + 111428 0.66 0.58081
Target:  5'- aGCGCUgCCgcaUCUCgGcGCGGUCCaGGAg -3'
miRNA:   3'- cCGCGAaGG---AGGGgC-CGCCAGGcCCU- -5'
29628 5' -64.1 NC_006151.1 + 89106 0.66 0.58081
Target:  5'- gGGgGCUUCCUgCgCgagaccgagggCGGCGGgaCCGGGGg -3'
miRNA:   3'- -CCgCGAAGGAgG-G-----------GCCGCCa-GGCCCU- -5'
29628 5' -64.1 NC_006151.1 + 90999 0.66 0.58081
Target:  5'- uGGCGCg--CUCCagcaCGGCGGUCCc--- -3'
miRNA:   3'- -CCGCGaagGAGGg---GCCGCCAGGcccu -5'
29628 5' -64.1 NC_006151.1 + 114701 0.66 0.58081
Target:  5'- gGGCGCg---UCCCCGGgGGcgguuUCCGGa- -3'
miRNA:   3'- -CCGCGaaggAGGGGCCgCC-----AGGCCcu -5'
29628 5' -64.1 NC_006151.1 + 59486 0.66 0.571283
Target:  5'- aGGCGC--CCUCgaagagCCCGGCGGccUCCGcGAc -3'
miRNA:   3'- -CCGCGaaGGAG------GGGCCGCC--AGGCcCU- -5'
29628 5' -64.1 NC_006151.1 + 17476 0.66 0.571283
Target:  5'- cGGCGUgUCCUCgUCGGCGGcgcgCCGc-- -3'
miRNA:   3'- -CCGCGaAGGAGgGGCCGCCa---GGCccu -5'
29628 5' -64.1 NC_006151.1 + 141756 0.66 0.568432
Target:  5'- gGGCGCgcg--CCCCGGUGGcgucgccgguucugUCCcGGGGa -3'
miRNA:   3'- -CCGCGaaggaGGGGCCGCC--------------AGG-CCCU- -5'
29628 5' -64.1 NC_006151.1 + 11170 0.66 0.568432
Target:  5'- cGGCGCcuagacaccgUUucugcagacagagcCCUCUCUaauGGCGcGUCCGGGAa -3'
miRNA:   3'- -CCGCG----------AA--------------GGAGGGG---CCGC-CAGGCCCU- -5'
29628 5' -64.1 NC_006151.1 + 125242 0.66 0.565584
Target:  5'- cGGCGCUcccCCggCCCGGCGGggacgcccgagccgCCGGc- -3'
miRNA:   3'- -CCGCGAa--GGagGGGCCGCCa-------------GGCCcu -5'
29628 5' -64.1 NC_006151.1 + 3872 0.66 0.561793
Target:  5'- gGGCGCccgCCgCCgCCGGCGccggcgCUGGGAc -3'
miRNA:   3'- -CCGCGaa-GGaGG-GGCCGCca----GGCCCU- -5'
29628 5' -64.1 NC_006151.1 + 86805 0.66 0.561793
Target:  5'- aGCGgggCCUCCCCGGCGc-CCGGc- -3'
miRNA:   3'- cCGCgaaGGAGGGGCCGCcaGGCCcu -5'
29628 5' -64.1 NC_006151.1 + 114914 0.66 0.5599
Target:  5'- gGGCGCacgg-CCCCGGCGucgcgcucggccUCCGGGGu -3'
miRNA:   3'- -CCGCGaaggaGGGGCCGCc-----------AGGCCCU- -5'
29628 5' -64.1 NC_006151.1 + 13067 0.66 0.552347
Target:  5'- cGCGCcccUUUUUCCUCGagaGCGGgcgUCCGGGAa -3'
miRNA:   3'- cCGCG---AAGGAGGGGC---CGCC---AGGCCCU- -5'
29628 5' -64.1 NC_006151.1 + 28872 0.66 0.552347
Target:  5'- cGGCGCg---UCCCCggaGGCGGgugCCGcGGGg -3'
miRNA:   3'- -CCGCGaaggAGGGG---CCGCCa--GGC-CCU- -5'
29628 5' -64.1 NC_006151.1 + 28591 0.66 0.552347
Target:  5'- cGGCGCg---UCCCCggaGGCGGgugCCGcGGGg -3'
miRNA:   3'- -CCGCGaaggAGGGG---CCGCCa--GGC-CCU- -5'
29628 5' -64.1 NC_006151.1 + 15336 0.66 0.552347
Target:  5'- cGCGCgUCCucUCCCCGcCGGUCaucgaGGGc -3'
miRNA:   3'- cCGCGaAGG--AGGGGCcGCCAGg----CCCu -5'
29628 5' -64.1 NC_006151.1 + 49582 0.66 0.552347
Target:  5'- cGCGCUcgCCggcgCCCCGGCcagcgcgcugccGGUCCuGGc -3'
miRNA:   3'- cCGCGAa-GGa---GGGGCCG------------CCAGGcCCu -5'
29628 5' -64.1 NC_006151.1 + 13134 0.66 0.552347
Target:  5'- cGCGaCUUCCcggCCCgCGauGCGGUCCcGGAa -3'
miRNA:   3'- cCGC-GAAGGa--GGG-GC--CGCCAGGcCCU- -5'
29628 5' -64.1 NC_006151.1 + 8301 0.66 0.552347
Target:  5'- gGGCGCcgcgUCCcgCCCCGaGCcc-CCGGGGc -3'
miRNA:   3'- -CCGCGa---AGGa-GGGGC-CGccaGGCCCU- -5'
29628 5' -64.1 NC_006151.1 + 88380 0.66 0.549523
Target:  5'- cGGCGCgagcgCgUCCgCGGCguccgcggccgcgaGGcCCGGGAc -3'
miRNA:   3'- -CCGCGaa---GgAGGgGCCG--------------CCaGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.