miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 5' -57.4 NC_006151.1 + 102212 0.66 0.849273
Target:  5'- cGGCGCccgcacccacggggaGGCGCCgu-GCGCCGUc--- -3'
miRNA:   3'- aCCGCG---------------CCGCGGaucUGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 103742 0.66 0.851641
Target:  5'- cUGGCGCGGCagugcgaggagcgcGCCgcGGCGCUGcgcgagUCg -3'
miRNA:   3'- -ACCGCGCCG--------------CGGauCUGUGGCaa----AGa -5'
29629 5' -57.4 NC_006151.1 + 20461 0.66 0.852426
Target:  5'- gGGgGUGGCGCCggucccccggggGGGCGCgGgggUCg -3'
miRNA:   3'- aCCgCGCCGCGGa-----------UCUGUGgCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 75223 0.66 0.853991
Target:  5'- gGGCGCGcGUcgGCCacgUAGGCGCCGa---- -3'
miRNA:   3'- aCCGCGC-CG--CGG---AUCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 126029 0.66 0.853991
Target:  5'- gGGCcuCGGCGaCgUGGGCGCCGccgUCg -3'
miRNA:   3'- aCCGc-GCCGC-GgAUCUGUGGCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 83625 0.66 0.837992
Target:  5'- cGGCGUcgcgaaGGCgGCCUGGugcuGCGCCGUg--- -3'
miRNA:   3'- aCCGCG------CCG-CGGAUC----UGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 77681 0.66 0.837992
Target:  5'- cGGCGuCGGCGCuCUcgcuGACGCuCGUg--- -3'
miRNA:   3'- aCCGC-GCCGCG-GAu---CUGUG-GCAaaga -5'
29629 5' -57.4 NC_006151.1 + 39294 0.66 0.821248
Target:  5'- cGGCGCGGgaccucggcuuCGCC--GGCGCCGUg--- -3'
miRNA:   3'- aCCGCGCC-----------GCGGauCUGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 84783 0.66 0.821248
Target:  5'- cGGCGCGcGcCGCCgaggAGGCGCCc----- -3'
miRNA:   3'- aCCGCGC-C-GCGGa---UCUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 86422 0.66 0.821248
Target:  5'- cGGCgucccuguccucGCGGCGCCUGG-CGCCc----- -3'
miRNA:   3'- aCCG------------CGCCGCGGAUCuGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 57614 0.66 0.829709
Target:  5'- cGGcCGCGGcCGCCUcgacggcgcgcgAGACcCCGUUg-- -3'
miRNA:   3'- aCC-GCGCC-GCGGA------------UCUGuGGCAAaga -5'
29629 5' -57.4 NC_006151.1 + 98463 0.66 0.821248
Target:  5'- cUGGCGCuguGGCGCCU--GCGCCa----- -3'
miRNA:   3'- -ACCGCG---CCGCGGAucUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 69141 0.66 0.829709
Target:  5'- gGGCGCgcgGGUGCUc-GACGCCGUgccgCUc -3'
miRNA:   3'- aCCGCG---CCGCGGauCUGUGGCAaa--GA- -5'
29629 5' -57.4 NC_006151.1 + 107036 0.66 0.829709
Target:  5'- cGGCGCGGCcCCUGGccggcgaGCCGg---- -3'
miRNA:   3'- aCCGCGCCGcGGAUCug-----UGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 118798 0.66 0.832213
Target:  5'- cGGCGCGGCgcaccugGCCUucgacgagaaccacgAGAgCGCCGUg--- -3'
miRNA:   3'- aCCGCGCCG-------CGGA---------------UCU-GUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 2301 0.66 0.837992
Target:  5'- cGGCGaCGGCGCCcgGGgucaGCACCa----- -3'
miRNA:   3'- aCCGC-GCCGCGGa-UC----UGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 18311 0.66 0.837992
Target:  5'- gGaGCGgGGCGCCUccucgGGGCGCaCGUa--- -3'
miRNA:   3'- aC-CGCgCCGCGGA-----UCUGUG-GCAaaga -5'
29629 5' -57.4 NC_006151.1 + 33303 0.66 0.837992
Target:  5'- gGGCGCGcGCGCgUGGG-ACCGg---- -3'
miRNA:   3'- aCCGCGC-CGCGgAUCUgUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 113107 0.66 0.837992
Target:  5'- gGGgGCGGgGCCgcggacgcGGACGCCGc---- -3'
miRNA:   3'- aCCgCGCCgCGGa-------UCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 50027 0.66 0.837992
Target:  5'- -cGCGCGGCGCCcccGGGCGCgGc---- -3'
miRNA:   3'- acCGCGCCGCGGa--UCUGUGgCaaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.