miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2963 3' -60.4 NC_001493.1 + 123854 0.66 0.702207
Target:  5'- cGgCGCCACAggagugacUCCGUGGCGC-GCCGUg -3'
miRNA:   3'- aCaGUGGUGU--------GGGCGUCGCGgUGGCA- -5'
2963 3' -60.4 NC_001493.1 + 8300 0.66 0.702207
Target:  5'- cGgCGCCACAggagugacUCCGUGGCGC-GCCGUg -3'
miRNA:   3'- aCaGUGGUGU--------GGGCGUCGCGgUGGCA- -5'
2963 3' -60.4 NC_001493.1 + 64017 0.66 0.69231
Target:  5'- -aUCACCACggcgacGCCCGCGGgaGCCAaCGa -3'
miRNA:   3'- acAGUGGUG------UGGGCGUCg-CGGUgGCa -5'
2963 3' -60.4 NC_001493.1 + 63975 0.66 0.69231
Target:  5'- -aUCACCACggcgacGCCCGCGGgaGCCAaCGa -3'
miRNA:   3'- acAGUGGUG------UGGGCGUCg-CGGUgGCa -5'
2963 3' -60.4 NC_001493.1 + 63606 0.66 0.69231
Target:  5'- -aUCACCACggcgacGCCCGCGGgaGCCAaCGa -3'
miRNA:   3'- acAGUGGUG------UGGGCGUCg-CGGUgGCa -5'
2963 3' -60.4 NC_001493.1 + 64059 0.66 0.69231
Target:  5'- -aUCACCACggcgacGCCCGCGGgaGCCAaCGa -3'
miRNA:   3'- acAGUGGUG------UGGGCGUCg-CGGUgGCa -5'
2963 3' -60.4 NC_001493.1 + 63485 0.66 0.682365
Target:  5'- aUGUCACgAaGCCCGCGGgauCGaccgaCACCGUg -3'
miRNA:   3'- -ACAGUGgUgUGGGCGUC---GCg----GUGGCA- -5'
2963 3' -60.4 NC_001493.1 + 63401 0.66 0.682365
Target:  5'- --cCACCACACCgGCgaugcccacgggAGCGaccgCACCGUg -3'
miRNA:   3'- acaGUGGUGUGGgCG------------UCGCg---GUGGCA- -5'
2963 3' -60.4 NC_001493.1 + 62816 0.66 0.681368
Target:  5'- cGUgACCACcacgacggcgaaGCCCGCGGgagccaaCGgCACCGUg -3'
miRNA:   3'- aCAgUGGUG------------UGGGCGUC-------GCgGUGGCA- -5'
2963 3' -60.4 NC_001493.1 + 62732 0.66 0.681368
Target:  5'- cGUgACCACcacgacggcgaaGCCCGCGGgagccaaCGgCACCGUg -3'
miRNA:   3'- aCAgUGGUG------------UGGGCGUC-------GCgGUGGCA- -5'
2963 3' -60.4 NC_001493.1 + 94868 0.66 0.67238
Target:  5'- gGcCAUCGCcCCCGUGGCacCCACCGg -3'
miRNA:   3'- aCaGUGGUGuGGGCGUCGc-GGUGGCa -5'
2963 3' -60.4 NC_001493.1 + 36596 0.66 0.67238
Target:  5'- gGUCACCGCcUCCaCuGCGCUGCUGg -3'
miRNA:   3'- aCAGUGGUGuGGGcGuCGCGGUGGCa -5'
2963 3' -60.4 NC_001493.1 + 65845 0.66 0.666373
Target:  5'- gUGUC-CCACuCCCuccggaguuuacgacGCGGCGgUCGCCGUg -3'
miRNA:   3'- -ACAGuGGUGuGGG---------------CGUCGC-GGUGGCA- -5'
2963 3' -60.4 NC_001493.1 + 90204 0.66 0.662363
Target:  5'- aUG-CGCUAUACCC-CAaauGCGCCAUCGg -3'
miRNA:   3'- -ACaGUGGUGUGGGcGU---CGCGGUGGCa -5'
2963 3' -60.4 NC_001493.1 + 125116 0.66 0.662363
Target:  5'- -cUCACgGCcuACCaCGCGGUGCuCGCCGa -3'
miRNA:   3'- acAGUGgUG--UGG-GCGUCGCG-GUGGCa -5'
2963 3' -60.4 NC_001493.1 + 9562 0.66 0.662363
Target:  5'- -cUCACgGCcuACCaCGCGGUGCuCGCCGa -3'
miRNA:   3'- acAGUGgUG--UGG-GCGUCGCG-GUGGCa -5'
2963 3' -60.4 NC_001493.1 + 129033 0.66 0.652323
Target:  5'- aG-CACCGCacgGCCCGCAGUuCC-CCGa -3'
miRNA:   3'- aCaGUGGUG---UGGGCGUCGcGGuGGCa -5'
2963 3' -60.4 NC_001493.1 + 24541 0.66 0.652323
Target:  5'- gUGUCACgGCACCguaGCGGUcacgGCCGuucCCGUg -3'
miRNA:   3'- -ACAGUGgUGUGGg--CGUCG----CGGU---GGCA- -5'
2963 3' -60.4 NC_001493.1 + 78508 0.66 0.652323
Target:  5'- gGUCuaugaACCACuCUCGCAGCuggGCCcCCGUg -3'
miRNA:   3'- aCAG-----UGGUGuGGGCGUCG---CGGuGGCA- -5'
2963 3' -60.4 NC_001493.1 + 110429 0.66 0.652323
Target:  5'- --cCGCCACACaUCGCGGCGagCACCu- -3'
miRNA:   3'- acaGUGGUGUG-GGCGUCGCg-GUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.