miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2963 5' -55.8 NC_001493.1 + 126921 0.66 0.90778
Target:  5'- -uGCGCCGCCucagcacGG-GGAUuuGACGGCc -3'
miRNA:   3'- agUGCGGUGGuca----CCgCCUA--UUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 81972 0.66 0.90778
Target:  5'- aCGCGCCAUgAaacuGUGGgGGAU--CGGUu -3'
miRNA:   3'- aGUGCGGUGgU----CACCgCCUAuuGCCG- -5'
2963 5' -55.8 NC_001493.1 + 11367 0.66 0.90778
Target:  5'- -uGCGCCGCCucagcacGG-GGAUuuGACGGCc -3'
miRNA:   3'- agUGCGGUGGuca----CCgCCUA--UUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 55726 0.66 0.904047
Target:  5'- -aAgGCCACCAuagaggaguacagGGCGGA-GAUGGCg -3'
miRNA:   3'- agUgCGGUGGUca-----------CCGCCUaUUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 87872 0.66 0.895007
Target:  5'- gUACGCCGCgGGgGGCagguccagGGGUAGaucCGGCu -3'
miRNA:   3'- aGUGCGGUGgUCaCCG--------CCUAUU---GCCG- -5'
2963 5' -55.8 NC_001493.1 + 124695 0.66 0.895007
Target:  5'- cCGCGCUcCCGGggaUGGCGGcgAGgGGg -3'
miRNA:   3'- aGUGCGGuGGUC---ACCGCCuaUUgCCg -5'
2963 5' -55.8 NC_001493.1 + 92787 0.66 0.895007
Target:  5'- aUCAC-CaCACCGGUGuCGGuccucuUGAUGGCg -3'
miRNA:   3'- -AGUGcG-GUGGUCACcGCCu-----AUUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 50597 0.66 0.895007
Target:  5'- aCugGCCGauGGUGuGCGGucGugGGCa -3'
miRNA:   3'- aGugCGGUggUCAC-CGCCuaUugCCG- -5'
2963 5' -55.8 NC_001493.1 + 9140 0.66 0.895007
Target:  5'- cCGCGCUcCCGGggaUGGCGGcgAGgGGg -3'
miRNA:   3'- aGUGCGGuGGUC---ACCGCCuaUUgCCg -5'
2963 5' -55.8 NC_001493.1 + 118560 0.66 0.888271
Target:  5'- gUCGUGCUcaACgGGaUGGUGGAUggGACGGCc -3'
miRNA:   3'- -AGUGCGG--UGgUC-ACCGCCUA--UUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 47087 0.66 0.888271
Target:  5'- cCACcCCGCCGcucacGCGGGUGAUGGUg -3'
miRNA:   3'- aGUGcGGUGGUcac--CGCCUAUUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 3005 0.66 0.888271
Target:  5'- gUCGUGCUcaACgGGaUGGUGGAUggGACGGCc -3'
miRNA:   3'- -AGUGCGG--UGgUC-ACCGCCUA--UUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 88310 0.66 0.880597
Target:  5'- aUCGCgGUCACCgauccacgaugcgGGU-GUGGAUGugGGCu -3'
miRNA:   3'- -AGUG-CGGUGG-------------UCAcCGCCUAUugCCG- -5'
2963 5' -55.8 NC_001493.1 + 24543 0.67 0.874117
Target:  5'- gUCACGgCACC-GUaGCGGuc-ACGGCc -3'
miRNA:   3'- -AGUGCgGUGGuCAcCGCCuauUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 108632 0.67 0.874117
Target:  5'- aUCGUGCUACauaaGGUGGUGGGga--GGCg -3'
miRNA:   3'- -AGUGCGGUGg---UCACCGCCUauugCCG- -5'
2963 5' -55.8 NC_001493.1 + 120051 0.67 0.866709
Target:  5'- gUCGgGUCGugaaCGGUGGCGGcgAACagGGCg -3'
miRNA:   3'- -AGUgCGGUg---GUCACCGCCuaUUG--CCG- -5'
2963 5' -55.8 NC_001493.1 + 56748 0.67 0.866709
Target:  5'- uUCGgGUUAUCGGUGGCcGcGAUAaccauguccagcGCGGCa -3'
miRNA:   3'- -AGUgCGGUGGUCACCG-C-CUAU------------UGCCG- -5'
2963 5' -55.8 NC_001493.1 + 8544 0.67 0.862162
Target:  5'- cCACGUCAUCAGaguccccgcucgcgGGCGuGAgGACGGUc -3'
miRNA:   3'- aGUGCGGUGGUCa-------------CCGC-CUaUUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 124099 0.67 0.862162
Target:  5'- cCACGUCAUCAGaguccccgcucgcgGGCGuGAgGACGGUc -3'
miRNA:   3'- aGUGCGGUGGUCa-------------CCGC-CUaUUGCCG- -5'
2963 5' -55.8 NC_001493.1 + 96152 0.67 0.859088
Target:  5'- cCGCGaCCGCCAGacaaucGGCGGGagUGACcacguccaGGCa -3'
miRNA:   3'- aGUGC-GGUGGUCa-----CCGCCU--AUUG--------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.