Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29631 | 3' | -62.2 | NC_006151.1 | + | 31558 | 0.67 | 0.58445 |
Target: 5'- gCGCCGcGGUGCGcgaacgUGAUCacggggGGGCgGcGCg -3' miRNA: 3'- -GCGGC-CCACGC------ACUAGg-----CCCGgCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 8578 | 0.67 | 0.58445 |
Target: 5'- gGgUGGGUGgGUGuga-GGGCCgGUGCg -3' miRNA: 3'- gCgGCCCACgCACuaggCCCGG-CACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 73047 | 0.67 | 0.574787 |
Target: 5'- gCGCgguggGGGUGCGcggGGUCCGcguGGCUGUGg -3' miRNA: 3'- -GCGg----CCCACGCa--CUAGGC---CCGGCACg -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 10977 | 0.67 | 0.574787 |
Target: 5'- uGgUGGGUGUcacgGUGGagCGGGCCGgggGCc -3' miRNA: 3'- gCgGCCCACG----CACUagGCCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 60272 | 0.67 | 0.569007 |
Target: 5'- cCGCCGcacGCGccccguggacUGGuagacggaggccaugUCCGGGCCGUGCg -3' miRNA: 3'- -GCGGCccaCGC----------ACU---------------AGGCCCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 10413 | 0.67 | 0.565162 |
Target: 5'- aGCgGGGUGacgccgcggGUGggCCGaGGCCG-GCg -3' miRNA: 3'- gCGgCCCACg--------CACuaGGC-CCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 4609 | 0.66 | 0.672057 |
Target: 5'- gGCCGuGGggcGCGUGGacCCGGcGCUG-GCa -3' miRNA: 3'- gCGGC-CCa--CGCACUa-GGCC-CGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 117191 | 0.66 | 0.662345 |
Target: 5'- cCGCCGGGggGCGUcGUaguaguagaCGGGCgCG-GCg -3' miRNA: 3'- -GCGGCCCa-CGCAcUAg--------GCCCG-GCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 34468 | 0.66 | 0.662345 |
Target: 5'- -uCCGGGUccggGCG-GGUCCGGGCuCGa-- -3' miRNA: 3'- gcGGCCCA----CGCaCUAGGCCCG-GCacg -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 4220 | 0.66 | 0.662345 |
Target: 5'- gGCCGGG-GCGcGGg-CGGGCgCGgGCa -3' miRNA: 3'- gCGGCCCaCGCaCUagGCCCG-GCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 83382 | 0.66 | 0.652612 |
Target: 5'- gCGCCGcaGGUGCuc-GUCCGGGUCcaGCg -3' miRNA: 3'- -GCGGC--CCACGcacUAGGCCCGGcaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 128808 | 0.66 | 0.666233 |
Target: 5'- aGCgCGGcGcGCGUGGccccguacgcggcgcUCUGGGCCuuGUGCu -3' miRNA: 3'- gCG-GCC-CaCGCACU---------------AGGCCCGG--CACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 51354 | 0.66 | 0.652612 |
Target: 5'- gGCCaGGacCGUGAgcaCCGGcCCGUGCu -3' miRNA: 3'- gCGGcCCacGCACUa--GGCCcGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 11045 | 0.66 | 0.652612 |
Target: 5'- gGCCGGGggcccgGCcUGGaCgCGGGCCacacuGUGCg -3' miRNA: 3'- gCGGCCCa-----CGcACUaG-GCCCGG-----CACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 97992 | 0.66 | 0.642864 |
Target: 5'- uGCCGGGcgGCGUGG-CCGcguaGGCgGcGCc -3' miRNA: 3'- gCGGCCCa-CGCACUaGGC----CCGgCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 14063 | 0.66 | 0.642864 |
Target: 5'- ---gGGGUGCGUGGcggCCcGGCCGacgGCa -3' miRNA: 3'- gcggCCCACGCACUa--GGcCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 75110 | 0.66 | 0.623351 |
Target: 5'- uGCCGGGcGCcagcagcUGGUCgGcGGCCGgcgGCg -3' miRNA: 3'- gCGGCCCaCGc------ACUAGgC-CCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 5008 | 0.66 | 0.633108 |
Target: 5'- gCGCgGGGgccggGCG-GGcUCCGGGgCCGggGCc -3' miRNA: 3'- -GCGgCCCa----CGCaCU-AGGCCC-GGCa-CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 139614 | 0.66 | 0.623351 |
Target: 5'- cCGuCCGGGcGCGgcugGGggccaUCCGGcGCCG-GCg -3' miRNA: 3'- -GC-GGCCCaCGCa---CU-----AGGCC-CGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 49635 | 0.66 | 0.620425 |
Target: 5'- aGUgGGGguggGcCGUGGaggaggucgagcccUCCGGGCCGcGCc -3' miRNA: 3'- gCGgCCCa---C-GCACU--------------AGGCCCGGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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