miRNA display CGI


Results 61 - 70 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 75110 0.66 0.623351
Target:  5'- uGCCGGGcGCcagcagcUGGUCgGcGGCCGgcgGCg -3'
miRNA:   3'- gCGGCCCaCGc------ACUAGgC-CCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 78110 0.66 0.623351
Target:  5'- gGCCGGG-GCGgacgccAUCCugcggcGGGCCGcggGCg -3'
miRNA:   3'- gCGGCCCaCGCac----UAGG------CCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 139614 0.66 0.623351
Target:  5'- cCGuCCGGGcGCGgcugGGggccaUCCGGcGCCG-GCg -3'
miRNA:   3'- -GC-GGCCCaCGCa---CU-----AGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 5008 0.66 0.633108
Target:  5'- gCGCgGGGgccggGCG-GGcUCCGGGgCCGggGCc -3'
miRNA:   3'- -GCGgCCCa----CGCaCU-AGGCCC-GGCa-CG- -5'
29631 3' -62.2 NC_006151.1 + 121156 0.66 0.633108
Target:  5'- gGCCGcuGGUGCagacggccGUGua-CGcGGCCGUGCu -3'
miRNA:   3'- gCGGC--CCACG--------CACuagGC-CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 39977 0.66 0.633108
Target:  5'- cCGCCGcGG-GCGccccgCC-GGCCGUGCu -3'
miRNA:   3'- -GCGGC-CCaCGCacua-GGcCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 59143 0.66 0.633108
Target:  5'- gCGcCCGcGG-GCG-GGUCCaGGCCG-GCg -3'
miRNA:   3'- -GC-GGC-CCaCGCaCUAGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 2824 0.66 0.642864
Target:  5'- gGCCGGGUccaggcggacGCGgacguagacgUGGUagucccccacggCCGGGCCGUccGCg -3'
miRNA:   3'- gCGGCCCA----------CGC----------ACUA------------GGCCCGGCA--CG- -5'
29631 3' -62.2 NC_006151.1 + 14063 0.66 0.642864
Target:  5'- ---gGGGUGCGUGGcggCCcGGCCGacgGCa -3'
miRNA:   3'- gcggCCCACGCACUa--GGcCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 137036 0.66 0.672057
Target:  5'- uGCCGGacGCGUGccccCCGGcGCCGgUGUa -3'
miRNA:   3'- gCGGCCcaCGCACua--GGCC-CGGC-ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.