Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29631 | 3' | -62.2 | NC_006151.1 | + | 117191 | 0.66 | 0.662345 |
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Target: 5'- cCGCCGGGggGCGUcGUaguaguagaCGGGCgCG-GCg -3' miRNA: 3'- -GCGGCCCa-CGCAcUAg--------GCCCG-GCaCG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 34468 | 0.66 | 0.662345 |
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Target: 5'- -uCCGGGUccggGCG-GGUCCGGGCuCGa-- -3' miRNA: 3'- gcGGCCCA----CGCaCUAGGCCCG-GCacg -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 54696 | 0.66 | 0.662345 |
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Target: 5'- uCGCCGGcaGCGUG--CUGGGCCaggGCc -3' miRNA: 3'- -GCGGCCcaCGCACuaGGCCCGGca-CG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 4220 | 0.66 | 0.662345 |
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Target: 5'- gGCCGGG-GCGcGGg-CGGGCgCGgGCa -3' miRNA: 3'- gCGGCCCaCGCaCUagGCCCG-GCaCG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 21496 | 0.66 | 0.662345 |
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Target: 5'- gGCCGGGggGCGcGGgcgucaCCGGGgCGgGCu -3' miRNA: 3'- gCGGCCCa-CGCaCUa-----GGCCCgGCaCG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 128808 | 0.66 | 0.666233 |
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Target: 5'- aGCgCGGcGcGCGUGGccccguacgcggcgcUCUGGGCCuuGUGCu -3' miRNA: 3'- gCG-GCC-CaCGCACU---------------AGGCCCGG--CACG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 137036 | 0.66 | 0.672057 |
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Target: 5'- uGCCGGacGCGUGccccCCGGcGCCGgUGUa -3' miRNA: 3'- gCGGCCcaCGCACua--GGCC-CGGC-ACG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 4314 | 0.66 | 0.672057 |
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Target: 5'- uCGCgGGGcacGCGg---CCGGGCUGcGCg -3' miRNA: 3'- -GCGgCCCa--CGCacuaGGCCCGGCaCG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 4609 | 0.66 | 0.672057 |
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Target: 5'- gGCCGuGGggcGCGUGGacCCGGcGCUG-GCa -3' miRNA: 3'- gCGGC-CCa--CGCACUa-GGCC-CGGCaCG- -5' |
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| 29631 | 3' | -62.2 | NC_006151.1 | + | 21327 | 0.66 | 0.672057 |
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Target: 5'- aCGCCcGGcGCGgcgggGGUCCGcGGCUGgaacgGCu -3' miRNA: 3'- -GCGGcCCaCGCa----CUAGGC-CCGGCa----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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