Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29631 | 3' | -62.2 | NC_006151.1 | + | 39977 | 0.66 | 0.633108 |
Target: 5'- cCGCCGcGG-GCGccccgCC-GGCCGUGCu -3' miRNA: 3'- -GCGGC-CCaCGCacua-GGcCCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 39477 | 0.72 | 0.306472 |
Target: 5'- gGcCCGGGUGcCGcGAgcUCCGcgcGGCCGUGCu -3' miRNA: 3'- gC-GGCCCAC-GCaCU--AGGC---CCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 34468 | 0.66 | 0.662345 |
Target: 5'- -uCCGGGUccggGCG-GGUCCGGGCuCGa-- -3' miRNA: 3'- gcGGCCCA----CGCaCUAGGCCCG-GCacg -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 31558 | 0.67 | 0.58445 |
Target: 5'- gCGCCGcGGUGCGcgaacgUGAUCacggggGGGCgGcGCg -3' miRNA: 3'- -GCGGC-CCACGC------ACUAGg-----CCCGgCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 21949 | 0.67 | 0.58445 |
Target: 5'- cCGCggaCGGGUccaccacaucgGCGUGGUgCGGcGCCG-GCa -3' miRNA: 3'- -GCG---GCCCA-----------CGCACUAgGCC-CGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 21496 | 0.66 | 0.662345 |
Target: 5'- gGCCGGGggGCGcGGgcgucaCCGGGgCGgGCu -3' miRNA: 3'- gCGGCCCa-CGCaCUa-----GGCCCgGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 21327 | 0.66 | 0.672057 |
Target: 5'- aCGCCcGGcGCGgcgggGGUCCGcGGCUGgaacgGCu -3' miRNA: 3'- -GCGGcCCaCGCa----CUAGGC-CCGGCa----CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 21146 | 0.67 | 0.6136 |
Target: 5'- aCGCCGGuacUGCGgaggcuacgGA-CCGGGCUGcGCu -3' miRNA: 3'- -GCGGCCc--ACGCa--------CUaGGCCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 20146 | 0.75 | 0.217952 |
Target: 5'- cCGCgGGGgcggcGCGUGGaccgCCGGGCCGcGCc -3' miRNA: 3'- -GCGgCCCa----CGCACUa---GGCCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 18750 | 0.69 | 0.454341 |
Target: 5'- cCGCCGGGgccccacgGgGUGcccggggcCCGGGCCGggGCc -3' miRNA: 3'- -GCGGCCCa-------CgCACua------GGCCCGGCa-CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 17169 | 0.68 | 0.546044 |
Target: 5'- gGUCGGcG-GCGcccagGAUCCacagguggaucgGGGCCGUGCc -3' miRNA: 3'- gCGGCC-CaCGCa----CUAGG------------CCCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 14637 | 0.68 | 0.527139 |
Target: 5'- cCGUCGGG-GCGgccgGGcucggguccgguUCCGGGUCG-GCg -3' miRNA: 3'- -GCGGCCCaCGCa---CU------------AGGCCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 14063 | 0.66 | 0.642864 |
Target: 5'- ---gGGGUGCGUGGcggCCcGGCCGacgGCa -3' miRNA: 3'- gcggCCCACGCACUa--GGcCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 11045 | 0.66 | 0.652612 |
Target: 5'- gGCCGGGggcccgGCcUGGaCgCGGGCCacacuGUGCg -3' miRNA: 3'- gCGGCCCa-----CGcACUaG-GCCCGG-----CACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 10977 | 0.67 | 0.574787 |
Target: 5'- uGgUGGGUGUcacgGUGGagCGGGCCGgggGCc -3' miRNA: 3'- gCgGCCCACG----CACUagGCCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 10413 | 0.67 | 0.565162 |
Target: 5'- aGCgGGGUGacgccgcggGUGggCCGaGGCCG-GCg -3' miRNA: 3'- gCGgCCCACg--------CACuaGGC-CCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 9040 | 0.72 | 0.327177 |
Target: 5'- cCGCCGGGgcgccccGCGUGcUCCGGgggcGCCGgccgGCc -3' miRNA: 3'- -GCGGCCCa------CGCACuAGGCC----CGGCa---CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 8578 | 0.67 | 0.58445 |
Target: 5'- gGgUGGGUGgGUGuga-GGGCCgGUGCg -3' miRNA: 3'- gCgGCCCACgCACuaggCCCGG-CACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 8223 | 0.76 | 0.176039 |
Target: 5'- gGCCGGGUccccuucccgGCGggGAgggCCGGGCCG-GCg -3' miRNA: 3'- gCGGCCCA----------CGCa-CUa--GGCCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 5914 | 0.69 | 0.454341 |
Target: 5'- uGCCGGGgucgGCGgccggGGcCCGGaGCCG-GCc -3' miRNA: 3'- gCGGCCCa---CGCa----CUaGGCC-CGGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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