miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29631 3' -62.2 NC_006151.1 + 117191 0.66 0.662345
Target:  5'- cCGCCGGGggGCGUcGUaguaguagaCGGGCgCG-GCg -3'
miRNA:   3'- -GCGGCCCa-CGCAcUAg--------GCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 128808 0.66 0.666233
Target:  5'- aGCgCGGcGcGCGUGGccccguacgcggcgcUCUGGGCCuuGUGCu -3'
miRNA:   3'- gCG-GCC-CaCGCACU---------------AGGCCCGG--CACG- -5'
29631 3' -62.2 NC_006151.1 + 4314 0.66 0.672057
Target:  5'- uCGCgGGGcacGCGg---CCGGGCUGcGCg -3'
miRNA:   3'- -GCGgCCCa--CGCacuaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 4609 0.66 0.672057
Target:  5'- gGCCGuGGggcGCGUGGacCCGGcGCUG-GCa -3'
miRNA:   3'- gCGGC-CCa--CGCACUa-GGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21327 0.66 0.672057
Target:  5'- aCGCCcGGcGCGgcgggGGUCCGcGGCUGgaacgGCu -3'
miRNA:   3'- -GCGGcCCaCGCa----CUAGGC-CCGGCa----CG- -5'
29631 3' -62.2 NC_006151.1 + 14063 0.66 0.642864
Target:  5'- ---gGGGUGCGUGGcggCCcGGCCGacgGCa -3'
miRNA:   3'- gcggCCCACGCACUa--GGcCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 2824 0.66 0.642864
Target:  5'- gGCCGGGUccaggcggacGCGgacguagacgUGGUagucccccacggCCGGGCCGUccGCg -3'
miRNA:   3'- gCGGCCCA----------CGC----------ACUA------------GGCCCGGCA--CG- -5'
29631 3' -62.2 NC_006151.1 + 81186 0.67 0.594143
Target:  5'- aCGCCGccgaGCGUGuacgCCGGGCCGcaguccggGCg -3'
miRNA:   3'- -GCGGCcca-CGCACua--GGCCCGGCa-------CG- -5'
29631 3' -62.2 NC_006151.1 + 117099 0.67 0.594143
Target:  5'- aCGCCGGccucGUGCGUca-CCaGGCCG-GCg -3'
miRNA:   3'- -GCGGCC----CACGCAcuaGGcCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 5725 0.67 0.603862
Target:  5'- uGCUGGuG-GCGccggGGUCCGaGGCCGcGCc -3'
miRNA:   3'- gCGGCC-CaCGCa---CUAGGC-CCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 21146 0.67 0.6136
Target:  5'- aCGCCGGuacUGCGgaggcuacgGA-CCGGGCUGcGCu -3'
miRNA:   3'- -GCGGCCc--ACGCa--------CUaGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 98356 0.67 0.6136
Target:  5'- cCGCgGGcGUGCGcgGGcUCUGGGCgCGcGCg -3'
miRNA:   3'- -GCGgCC-CACGCa-CU-AGGCCCG-GCaCG- -5'
29631 3' -62.2 NC_006151.1 + 49635 0.66 0.620425
Target:  5'- aGUgGGGguggGcCGUGGaggaggucgagcccUCCGGGCCGcGCc -3'
miRNA:   3'- gCGgCCCa---C-GCACU--------------AGGCCCGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 75110 0.66 0.623351
Target:  5'- uGCCGGGcGCcagcagcUGGUCgGcGGCCGgcgGCg -3'
miRNA:   3'- gCGGCCCaCGc------ACUAGgC-CCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 78110 0.66 0.623351
Target:  5'- gGCCGGG-GCGgacgccAUCCugcggcGGGCCGcggGCg -3'
miRNA:   3'- gCGGCCCaCGCac----UAGG------CCCGGCa--CG- -5'
29631 3' -62.2 NC_006151.1 + 139614 0.66 0.623351
Target:  5'- cCGuCCGGGcGCGgcugGGggccaUCCGGcGCCG-GCg -3'
miRNA:   3'- -GC-GGCCCaCGCa---CU-----AGGCC-CGGCaCG- -5'
29631 3' -62.2 NC_006151.1 + 5008 0.66 0.633108
Target:  5'- gCGCgGGGgccggGCG-GGcUCCGGGgCCGggGCc -3'
miRNA:   3'- -GCGgCCCa----CGCaCU-AGGCCC-GGCa-CG- -5'
29631 3' -62.2 NC_006151.1 + 121156 0.66 0.633108
Target:  5'- gGCCGcuGGUGCagacggccGUGua-CGcGGCCGUGCu -3'
miRNA:   3'- gCGGC--CCACG--------CACuagGC-CCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 39977 0.66 0.633108
Target:  5'- cCGCCGcGG-GCGccccgCC-GGCCGUGCu -3'
miRNA:   3'- -GCGGC-CCaCGCacua-GGcCCGGCACG- -5'
29631 3' -62.2 NC_006151.1 + 59143 0.66 0.633108
Target:  5'- gCGcCCGcGG-GCG-GGUCCaGGCCG-GCg -3'
miRNA:   3'- -GC-GGC-CCaCGCaCUAGGcCCGGCaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.