miRNA display CGI


Results 41 - 56 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 5' -58.3 NC_006151.1 + 141840 0.66 0.820458
Target:  5'- cCCgcgcUCGACgcgaggggCUCGcgCCGCGCCCUCu -3'
miRNA:   3'- uGGacu-AGCUG--------GAGUa-GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 57600 0.67 0.766734
Target:  5'- gACCaGGcCGGCCUCggCCGCGgCCg- -3'
miRNA:   3'- -UGGaCUaGCUGGAGuaGGCGCgGGag -5'
29632 5' -58.3 NC_006151.1 + 37196 0.67 0.757318
Target:  5'- gGCCc--UCGGCCUCcUCCGCcUCCUCc -3'
miRNA:   3'- -UGGacuAGCUGGAGuAGGCGcGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 114230 0.68 0.702836
Target:  5'- uCCUGGccUCGGuggccgcgcgggaccCCUCGgagCGCGCCCUCg -3'
miRNA:   3'- uGGACU--AGCU---------------GGAGUag-GCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 89867 0.68 0.708788
Target:  5'- ---cGGUCG-CCUCGUagaCGCGCCgCUCg -3'
miRNA:   3'- uggaCUAGCuGGAGUAg--GCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 99736 0.68 0.708788
Target:  5'- gGCgCUcGUCGACCUCGccgccgCCGCGgaCCUCg -3'
miRNA:   3'- -UG-GAcUAGCUGGAGUa-----GGCGCg-GGAG- -5'
29632 5' -58.3 NC_006151.1 + 83916 0.67 0.718658
Target:  5'- cGCCUGcgccgCGACC-CGUCCGCGUacggcgagagUCUCu -3'
miRNA:   3'- -UGGACua---GCUGGaGUAGGCGCG----------GGAG- -5'
29632 5' -58.3 NC_006151.1 + 37029 0.67 0.728455
Target:  5'- cGCCgcgcGGcgcUCGGCCUCcUCCuCGUCCUCg -3'
miRNA:   3'- -UGGa---CU---AGCUGGAGuAGGcGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 37976 0.67 0.728455
Target:  5'- cGCCUGcGUCcuGGCCUgCcgCgGCGUCCUCg -3'
miRNA:   3'- -UGGAC-UAG--CUGGA-GuaGgCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 105466 0.67 0.728455
Target:  5'- cCCUGggCGACUUCuUCCGCgacgccgguGCCgUCg -3'
miRNA:   3'- uGGACuaGCUGGAGuAGGCG---------CGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 122792 0.67 0.738169
Target:  5'- -gCUGcgCGGCCUCGcCCGacgaGCgCCUCg -3'
miRNA:   3'- ugGACuaGCUGGAGUaGGCg---CG-GGAG- -5'
29632 5' -58.3 NC_006151.1 + 38821 0.67 0.747794
Target:  5'- cGCCcGAcggCGGCUUCcgCCGCGUCC-Cg -3'
miRNA:   3'- -UGGaCUa--GCUGGAGuaGGCGCGGGaG- -5'
29632 5' -58.3 NC_006151.1 + 12079 0.67 0.748751
Target:  5'- gGCCUcccCGACCUCucucacccgcccucCCGCGCUCUCu -3'
miRNA:   3'- -UGGAcuaGCUGGAGua------------GGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 39145 0.67 0.751616
Target:  5'- gGCCUGGgacccgcgccgcggCGGCCUC-UCgGCGCUgCUCg -3'
miRNA:   3'- -UGGACUa-------------GCUGGAGuAGgCGCGG-GAG- -5'
29632 5' -58.3 NC_006151.1 + 73276 0.67 0.751616
Target:  5'- uGCCggcGUUGACCgugcggcgcagguagUCGUCCGCGUCCg- -3'
miRNA:   3'- -UGGac-UAGCUGG---------------AGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 132616 0.66 0.820458
Target:  5'- cCCaGGUCGACgCUCgcguccgccGUCgGCGCCCg- -3'
miRNA:   3'- uGGaCUAGCUG-GAG---------UAGgCGCGGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.