Results 41 - 60 of 301 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29634 | 5' | -59.5 | NC_006151.1 | + | 59945 | 0.66 | 0.798105 |
Target: 5'- cGGCGGCu-CGCagcCCUCGaGCGCCa- -3' miRNA: 3'- -CCGCUGcuGCGgauGGAGC-CGUGGca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 72271 | 0.66 | 0.798105 |
Target: 5'- aGCGGCGugGCCaGCaugCGGUGCgGc -3' miRNA: 3'- cCGCUGCugCGGaUGga-GCCGUGgCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 99502 | 0.66 | 0.798105 |
Target: 5'- gGGCGugGagcacgugguGCGCC-ACUgcaUGGCGCCGc -3' miRNA: 3'- -CCGCugC----------UGCGGaUGGa--GCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 106950 | 0.66 | 0.798105 |
Target: 5'- gGGCGA--GCGCCUGCU--GGCGCuCGa -3' miRNA: 3'- -CCGCUgcUGCGGAUGGagCCGUG-GCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 130353 | 0.66 | 0.798105 |
Target: 5'- cGGCGuCGugGUUgacgGCCgCGcGCGCCGc -3' miRNA: 3'- -CCGCuGCugCGGa---UGGaGC-CGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 22939 | 0.66 | 0.789321 |
Target: 5'- cGGUGAUGcCGCUggguCCUCGGUcguCCGc -3' miRNA: 3'- -CCGCUGCuGCGGau--GGAGCCGu--GGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 84922 | 0.66 | 0.789321 |
Target: 5'- cGCGGCGcCGCCUccggcgugcuCUUCGGCACg-- -3' miRNA: 3'- cCGCUGCuGCGGAu---------GGAGCCGUGgca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 85050 | 0.66 | 0.780404 |
Target: 5'- gGGCGugacgaccACGGCGCUgcagGCCUgCGgGCGCCuGUa -3' miRNA: 3'- -CCGC--------UGCUGCGGa---UGGA-GC-CGUGG-CA- -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 100322 | 0.66 | 0.780404 |
Target: 5'- aGgGugGGC-CCUGCCUgGGCACg-- -3' miRNA: 3'- cCgCugCUGcGGAUGGAgCCGUGgca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 19277 | 0.66 | 0.780404 |
Target: 5'- uGGCGcGCGGgGCCcACCggggccagCGGCGCgGg -3' miRNA: 3'- -CCGC-UGCUgCGGaUGGa-------GCCGUGgCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 39156 | 0.66 | 0.780404 |
Target: 5'- cGCGccGCGGCgGCCU--CUCGGCGCUGc -3' miRNA: 3'- cCGC--UGCUG-CGGAugGAGCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 77560 | 0.66 | 0.780404 |
Target: 5'- aGCGACGACGUCUucguggacGCCcUGGgGCUGc -3' miRNA: 3'- cCGCUGCUGCGGA--------UGGaGCCgUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 128537 | 0.66 | 0.780404 |
Target: 5'- aGGCcACGGCggGCCcGCCggcgCGGUGCCGc -3' miRNA: 3'- -CCGcUGCUG--CGGaUGGa---GCCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 130883 | 0.66 | 0.780404 |
Target: 5'- gGGCGGCGGCGgUggagGCggCGGCcgucGCCGUc -3' miRNA: 3'- -CCGCUGCUGCgGa---UGgaGCCG----UGGCA- -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 18557 | 0.66 | 0.780404 |
Target: 5'- cGGCcGCGAgGCC-GCC-CGGCGgCGg -3' miRNA: 3'- -CCGcUGCUgCGGaUGGaGCCGUgGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 28180 | 0.66 | 0.780404 |
Target: 5'- gGGCGGCGAgUGCCgucgGCCg-GGcCGCCa- -3' miRNA: 3'- -CCGCUGCU-GCGGa---UGGagCC-GUGGca -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 87070 | 0.66 | 0.783986 |
Target: 5'- cGGgGA-GGCGCCgccccccgcgagcgACCUCGcCGCCGUg -3' miRNA: 3'- -CCgCUgCUGCGGa-------------UGGAGCcGUGGCA- -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 49184 | 0.66 | 0.789321 |
Target: 5'- gGGUGcugcugcugaacACGACGCUgACCgugCGGCGCgGg -3' miRNA: 3'- -CCGC------------UGCUGCGGaUGGa--GCCGUGgCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 107048 | 0.66 | 0.789321 |
Target: 5'- uGGcCGGCGAgccgGCCUGCCUC-GUGCUGg -3' miRNA: 3'- -CC-GCUGCUg---CGGAUGGAGcCGUGGCa -5' |
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29634 | 5' | -59.5 | NC_006151.1 | + | 70773 | 0.66 | 0.789321 |
Target: 5'- cGGCcaACG-CGCgcGCCUcCGGCACCGg -3' miRNA: 3'- -CCGc-UGCuGCGgaUGGA-GCCGUGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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