Results 121 - 125 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29635 | 3' | -67.6 | NC_006151.1 | + | 46628 | 0.66 | 0.369905 |
Target: 5'- gGUGCCUgCGAcgcGGCCggacgggcggacaggCCC-AGGGCGAGa -3' miRNA: 3'- -UACGGGgGCU---CCGG---------------GGGcUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 142722 | 0.66 | 0.372186 |
Target: 5'- --uCCCCCG-GGCCCCCacaacucucuggccGGGGGCc-- -3' miRNA: 3'- uacGGGGGCuCCGGGGG--------------CUCCCGcuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 27337 | 0.66 | 0.373711 |
Target: 5'- cUGCuCCCCGggaccggggucguGGGCCggggCCCGGgcgggucgacGGGCGAGa -3' miRNA: 3'- uACG-GGGGC-------------UCCGG----GGGCU----------CCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 51215 | 0.66 | 0.374476 |
Target: 5'- -gGCCgCCCGcGGGCCCgCGcAGGcggcGCGAGc -3' miRNA: 3'- uaCGG-GGGC-UCCGGGgGC-UCC----CGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 50023 | 0.66 | 0.374476 |
Target: 5'- -gGCCCgCGcGGcGCCCCCGGGcGCGGc -3' miRNA: 3'- uaCGGGgGC-UC-CGGGGGCUCcCGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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