Results 81 - 100 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29635 | 3' | -67.6 | NC_006151.1 | + | 114921 | 0.67 | 0.303374 |
Target: 5'- -cGgCCCCGGcgucgcgcucGGCCUCCG-GGGUGGGc -3' miRNA: 3'- uaCgGGGGCU----------CCGGGGGCuCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 14027 | 0.67 | 0.309994 |
Target: 5'- -gGCCCgUCGGcccGGCCCCCucgacGGGGCGAu -3' miRNA: 3'- uaCGGG-GGCU---CCGGGGGc----UCCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 40013 | 0.67 | 0.312672 |
Target: 5'- uUGCCCCCuucGAGaccagcguccgcgccGCCgCCGGGGGCGc- -3' miRNA: 3'- uACGGGGG---CUC---------------CGGgGGCUCCCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 134411 | 0.67 | 0.316722 |
Target: 5'- cUGCCCgCgCGAGcuggugcuGcCCCCCGGGGGCGc- -3' miRNA: 3'- uACGGG-G-GCUC--------C-GGGGGCUCCCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 105308 | 0.67 | 0.316722 |
Target: 5'- -cGCCUCCGAggacgaGGCCCCCcuGGcCGAGg -3' miRNA: 3'- uaCGGGGGCU------CCGGGGGcuCCcGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 19287 | 0.67 | 0.316722 |
Target: 5'- -gGCCCaCCGGGGCCagCGGcgcGGGCGGc -3' miRNA: 3'- uaCGGG-GGCUCCGGggGCU---CCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 37008 | 0.67 | 0.316722 |
Target: 5'- -cGCCCCCcGGGCCCCCGccgccgccgcGcGGCGc- -3' miRNA: 3'- uaCGGGGGcUCCGGGGGCu---------C-CCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 131934 | 0.67 | 0.323561 |
Target: 5'- gGUGCUgCCGuagcuGGCCacgggCGAGGGCGGGc -3' miRNA: 3'- -UACGGgGGCu----CCGGgg---GCUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 135717 | 0.67 | 0.323561 |
Target: 5'- cUGCUCaCGGGcaggaGCCCUCGGGGGCGGu -3' miRNA: 3'- uACGGGgGCUC-----CGGGGGCUCCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 117801 | 0.67 | 0.326326 |
Target: 5'- -cGCCCggcggggCGGGGCCCCaCGcuuuaagacccggccGGGGCGGGc -3' miRNA: 3'- uaCGGGg------GCUCCGGGG-GC---------------UCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 44167 | 0.67 | 0.329809 |
Target: 5'- cGUGCCCCUGGGagcaccgcgggucGCCgUCCGGGcGGCGGc -3' miRNA: 3'- -UACGGGGGCUC-------------CGG-GGGCUC-CCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 57266 | 0.67 | 0.330508 |
Target: 5'- -gGCCCUCGAcGGCCUCgCGcagcAGGGCGu- -3' miRNA: 3'- uaCGGGGGCU-CCGGGG-GC----UCCCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 76223 | 0.67 | 0.333318 |
Target: 5'- cGUGCCgUCGAGGUUcucgcccgagaugagCCCGAGGGCc-- -3' miRNA: 3'- -UACGGgGGCUCCGG---------------GGGCUCCCGcuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 122428 | 0.67 | 0.337565 |
Target: 5'- -cGCCgCCGAGGCCCggGAGGcG-GAGg -3' miRNA: 3'- uaCGGgGGCUCCGGGggCUCC-CgCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 89643 | 0.67 | 0.337565 |
Target: 5'- -cGCCCuuGAcGGCCaCCGAGaGGUGGc -3' miRNA: 3'- uaCGGGggCU-CCGGgGGCUC-CCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 87203 | 0.67 | 0.337565 |
Target: 5'- cUGCCgCCCGGGGCCgUCGuGGGaCa-- -3' miRNA: 3'- uACGG-GGGCUCCGGgGGCuCCC-Gcuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 650 | 0.67 | 0.337565 |
Target: 5'- -gGCUUCCGGGGCgCggCCG-GGGCGGGc -3' miRNA: 3'- uaCGGGGGCUCCGgG--GGCuCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 13991 | 0.67 | 0.344731 |
Target: 5'- -cGUCCCCGGGGCCCaCGu--GUGAGg -3' miRNA: 3'- uaCGGGGGCUCCGGGgGCuccCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 27164 | 0.67 | 0.344731 |
Target: 5'- -cGgCCCCGAGGCgCCgCGugucGGGGCGccAGg -3' miRNA: 3'- uaCgGGGGCUCCG-GGgGC----UCCCGC--UC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 41538 | 0.67 | 0.344731 |
Target: 5'- -aGCCCCCGcccgcGGaCCCCCGgugcgacggaaGGGGCa-- -3' miRNA: 3'- uaCGGGGGCu----CC-GGGGGC-----------UCCCGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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