Results 121 - 125 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29635 | 3' | -67.6 | NC_006151.1 | + | 2188 | 0.79 | 0.048635 |
Target: 5'- -gGCgCCCGAGGCCCCCGcGGGCcGGu -3' miRNA: 3'- uaCGgGGGCUCCGGGGGCuCCCGcUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 33210 | 0.79 | 0.046222 |
Target: 5'- -cGCCCCCGgagcacgcgGGGCgCCCCGGcGGGCGGGa -3' miRNA: 3'- uaCGGGGGC---------UCCG-GGGGCU-CCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 46829 | 0.82 | 0.026318 |
Target: 5'- cUGCCCCCGAGaccgccGCCCCCcGGGGCGGGc -3' miRNA: 3'- uACGGGGGCUC------CGGGGGcUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 124025 | 0.83 | 0.021977 |
Target: 5'- -gGCCCCUcgGAGGCCCCCGAcGGCGAGu -3' miRNA: 3'- uaCGGGGG--CUCCGGGGGCUcCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 52376 | 0.88 | 0.009603 |
Target: 5'- -cGCCCCCGGGGCCCgCGGGGGCGGc -3' miRNA: 3'- uaCGGGGGCUCCGGGgGCUCCCGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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