miRNA display CGI


Results 101 - 120 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 22626 0.68 0.284171
Target:  5'- gAUGCCCacgaCGAccaGGCCggCGAGGGCGAc -3'
miRNA:   3'- -UACGGGg---GCU---CCGGggGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 22200 0.71 0.188695
Target:  5'- -cGUCCgCGGGGCCgaCGaAGGGCGAGg -3'
miRNA:   3'- uaCGGGgGCUCCGGggGC-UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 21571 0.66 0.352006
Target:  5'- -aGCCCgCCGAGGgCCgCGcGGGGuCGAu -3'
miRNA:   3'- uaCGGG-GGCUCCgGGgGC-UCCC-GCUc -5'
29635 3' -67.6 NC_006151.1 + 21035 0.69 0.227095
Target:  5'- -cGCCCCUGAagaggacGCCCCCGAcgcgcggggucaGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUc------CGGGGGCU------------CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 20297 0.66 0.389986
Target:  5'- -gGgCCCCGGGcGCCCgCCGuggcguuggcGGcGGCGAGc -3'
miRNA:   3'- uaCgGGGGCUC-CGGG-GGC----------UC-CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 19287 0.67 0.316722
Target:  5'- -gGCCCaCCGGGGCCagCGGcgcGGGCGGc -3'
miRNA:   3'- uaCGGG-GGCUCCGGggGCU---CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 18748 0.73 0.122605
Target:  5'- -cGCCgCCGGGGCCCCaCGGGGuGCccGGGg -3'
miRNA:   3'- uaCGGgGGCUCCGGGG-GCUCC-CG--CUC- -5'
29635 3' -67.6 NC_006151.1 + 18557 0.71 0.188695
Target:  5'- -cGgCCgCGAGGCCgCCCGGcGGCGGGa -3'
miRNA:   3'- uaCgGGgGCUCCGG-GGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 18411 0.68 0.284171
Target:  5'- cUGUCCCCGccgggggaggaGGGCCgCCGGcGGGCGu- -3'
miRNA:   3'- uACGGGGGC-----------UCCGGgGGCU-CCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 17799 0.67 0.345454
Target:  5'- -cGCCCCCccGGaCCCCCccuccugggcgcggcGGGGCGGGc -3'
miRNA:   3'- uaCGGGGGcuCC-GGGGGc--------------UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 17206 0.68 0.27191
Target:  5'- cGUGCCCC--GGGCCCCCGAGuucaGGUa-- -3'
miRNA:   3'- -UACGGGGgcUCCGGGGGCUC----CCGcuc -5'
29635 3' -67.6 NC_006151.1 + 14027 0.67 0.309994
Target:  5'- -gGCCCgUCGGcccGGCCCCCucgacGGGGCGAu -3'
miRNA:   3'- uaCGGG-GGCU---CCGGGGGc----UCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 13991 0.67 0.344731
Target:  5'- -cGUCCCCGGGGCCCaCGu--GUGAGg -3'
miRNA:   3'- uaCGGGGGCUCCGGGgGCuccCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 13893 0.68 0.269509
Target:  5'- cGUGCCCCCauuggcgauuuaucGAucgcuuuccgaagGGaucgaaCCCCGGGGGCGGGc -3'
miRNA:   3'- -UACGGGGG--------------CU-------------CCg-----GGGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 11460 0.68 0.276152
Target:  5'- cGUGCCCCCGGGGCcaucggcuggaacaCCCUGAGccuucGCuGAGu -3'
miRNA:   3'- -UACGGGGGCUCCG--------------GGGGCUCc----CG-CUC- -5'
29635 3' -67.6 NC_006151.1 + 9037 0.73 0.13189
Target:  5'- -cGCCCgCCGGGGCgCCCCGcgugcuccgGGGGCGc- -3'
miRNA:   3'- uaCGGG-GGCUCCG-GGGGC---------UCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 8373 0.7 0.197724
Target:  5'- -gGCCCCC---GCCCCCGGGGGggucCGGGa -3'
miRNA:   3'- uaCGGGGGcucCGGGGGCUCCC----GCUC- -5'
29635 3' -67.6 NC_006151.1 + 8314 0.69 0.232336
Target:  5'- -cG-CCCCGA-GCCCCCGGGGcgcGCGGGc -3'
miRNA:   3'- uaCgGGGGCUcCGGGGGCUCC---CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 5868 0.75 0.088991
Target:  5'- -aGCgCCCGGGGCCgCCGGGGGCc-- -3'
miRNA:   3'- uaCGgGGGCUCCGGgGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 4193 0.7 0.207127
Target:  5'- --cUCCUCGAGGCaggcgggCCCGAGGGCGGc -3'
miRNA:   3'- uacGGGGGCUCCGg------GGGCUCCCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.