Results 81 - 85 of 85 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29635 | 5' | -56.1 | NC_006151.1 | + | 71721 | 0.75 | 0.397254 |
|
Target: 5'- aGGCgauccaGGCCUCCAGCG-CCUCGAacACg -3' miRNA: 3'- -UCGa-----CUGGAGGUCGCuGGAGCUguUG- -5' |
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| 29635 | 5' | -56.1 | NC_006151.1 | + | 57604 | 0.75 | 0.388747 |
|
Target: 5'- aGGCcGGCCUCggccgCGGCcGCCUCGACGGCg -3' miRNA: 3'- -UCGaCUGGAG-----GUCGcUGGAGCUGUUG- -5' |
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| 29635 | 5' | -56.1 | NC_006151.1 | + | 109934 | 0.77 | 0.325123 |
|
Target: 5'- cGCcGGCCUCUccccugGGCGGCCUCGGCcGCg -3' miRNA: 3'- uCGaCUGGAGG------UCGCUGGAGCUGuUG- -5' |
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| 29635 | 5' | -56.1 | NC_006151.1 | + | 105689 | 0.77 | 0.325123 |
|
Target: 5'- cGGCgcggGGCCgacgCCGGCGcggccgcgcGCCUCGACGGCg -3' miRNA: 3'- -UCGa---CUGGa---GGUCGC---------UGGAGCUGUUG- -5' |
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| 29635 | 5' | -56.1 | NC_006151.1 | + | 57285 | 0.77 | 0.303344 |
|
Target: 5'- cAGCagGGCgUCCAGCGcgGCCUUGGCGGCg -3' miRNA: 3'- -UCGa-CUGgAGGUCGC--UGGAGCUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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