miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 5' -56.1 NC_006151.1 + 81522 0.67 0.816027
Target:  5'- cGCgUGAgCU-CGGCGGCCgCGGCGGCg -3'
miRNA:   3'- uCG-ACUgGAgGUCGCUGGaGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 81648 0.66 0.865145
Target:  5'- uGCUGgucgaaggGCUUCCcccgcacggagcGGCGguacGCCUCGGCGACg -3'
miRNA:   3'- uCGAC--------UGGAGG------------UCGC----UGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 81988 0.69 0.721564
Target:  5'- gGGCUGcACCa-CGGCGGCCagGGCGGCc -3'
miRNA:   3'- -UCGAC-UGGagGUCGCUGGagCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 82211 0.7 0.681061
Target:  5'- gAGaugaUGACCUCCAGCGGCaggaaggagCG-CAGCg -3'
miRNA:   3'- -UCg---ACUGGAGGUCGCUGga-------GCuGUUG- -5'
29635 5' -56.1 NC_006151.1 + 84924 0.73 0.478886
Target:  5'- cGGCgccGCCUCCGGCGugCUCuuCGGCa -3'
miRNA:   3'- -UCGac-UGGAGGUCGCugGAGcuGUUG- -5'
29635 5' -56.1 NC_006151.1 + 87345 0.7 0.660527
Target:  5'- uGCcgGGCCUCCAG-GGCCU-GGCGGCc -3'
miRNA:   3'- uCGa-CUGGAGGUCgCUGGAgCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 94866 0.66 0.879881
Target:  5'- cGCUG-CUcUCGGUGACCUgCGACGAg -3'
miRNA:   3'- uCGACuGGaGGUCGCUGGA-GCUGUUg -5'
29635 5' -56.1 NC_006151.1 + 95085 0.67 0.85274
Target:  5'- cGCUGGCgUCCaugacgccguagagcAGCu-CCUCGGCGAUg -3'
miRNA:   3'- uCGACUGgAGG---------------UCGcuGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 100115 0.72 0.547662
Target:  5'- cGCUGGCggCCAGCGccuuCCUCGGgGACc -3'
miRNA:   3'- uCGACUGgaGGUCGCu---GGAGCUgUUG- -5'
29635 5' -56.1 NC_006151.1 + 100145 0.71 0.607901
Target:  5'- uGCUGGcacgcgcCCUCCGGCGccGCCUgGAgGACa -3'
miRNA:   3'- uCGACU-------GGAGGUCGC--UGGAgCUgUUG- -5'
29635 5' -56.1 NC_006151.1 + 100338 0.66 0.886915
Target:  5'- gGGCacgUGGCgUCUGGCgGACgUCGugGACg -3'
miRNA:   3'- -UCG---ACUGgAGGUCG-CUGgAGCugUUG- -5'
29635 5' -56.1 NC_006151.1 + 102048 0.66 0.879881
Target:  5'- gAGCUGGCC-CCGcuCGACCUgGGCccgcuGCa -3'
miRNA:   3'- -UCGACUGGaGGUc-GCUGGAgCUGu----UG- -5'
29635 5' -56.1 NC_006151.1 + 102511 0.7 0.681061
Target:  5'- cGGCgcggGACC-CCGGCGGCgUCuACGACc -3'
miRNA:   3'- -UCGa---CUGGaGGUCGCUGgAGcUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 103799 0.68 0.760815
Target:  5'- cGCUGcagGCCgcgcugUCGGCGGCCguggCGGCGGCc -3'
miRNA:   3'- uCGAC---UGGa-----GGUCGCUGGa---GCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 104291 0.67 0.833163
Target:  5'- cGCUGcagGCgCUgCAGCGGCugacguggCUCGACGACu -3'
miRNA:   3'- uCGAC---UG-GAgGUCGCUG--------GAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 105294 0.66 0.879881
Target:  5'- cGC-GGCCgcgCCGGCG-CCUcCGAgGACg -3'
miRNA:   3'- uCGaCUGGa--GGUCGCuGGA-GCUgUUG- -5'
29635 5' -56.1 NC_006151.1 + 105689 0.77 0.325123
Target:  5'- cGGCgcggGGCCgacgCCGGCGcggccgcgcGCCUCGACGGCg -3'
miRNA:   3'- -UCGa---CUGGa---GGUCGC---------UGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 107534 0.73 0.478886
Target:  5'- cGUUGGCC-CCGGCGGCCcCGcCGGCg -3'
miRNA:   3'- uCGACUGGaGGUCGCUGGaGCuGUUG- -5'
29635 5' -56.1 NC_006151.1 + 107599 0.66 0.891702
Target:  5'- aAGCUGGCCccgCCGGCGccgccgcccgccaaGCCcguggaGACGACc -3'
miRNA:   3'- -UCGACUGGa--GGUCGC--------------UGGag----CUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 109278 0.72 0.55574
Target:  5'- cGCUGGCCgcccccuccgagaUCgAGCGgcccgccGCCUCGGCGGCa -3'
miRNA:   3'- uCGACUGG-------------AGgUCGC-------UGGAGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.