miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 5' -56.1 NC_006151.1 + 60946 0.72 0.588361
Target:  5'- gAGCUG-CC-CCAGCguggacauGACCUCGuCGACg -3'
miRNA:   3'- -UCGACuGGaGGUCG--------CUGGAGCuGUUG- -5'
29635 5' -56.1 NC_006151.1 + 59486 0.67 0.833163
Target:  5'- aGGCgc-CCUcgaagagcCCGGCGGCCUCcGCGACg -3'
miRNA:   3'- -UCGacuGGA--------GGUCGCUGGAGcUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 58359 0.67 0.841456
Target:  5'- aAGCUGGuCCgCCGcgucGUGAUCUCGACGGa -3'
miRNA:   3'- -UCGACU-GGaGGU----CGCUGGAGCUGUUg -5'
29635 5' -56.1 NC_006151.1 + 57604 0.75 0.388747
Target:  5'- aGGCcGGCCUCggccgCGGCcGCCUCGACGGCg -3'
miRNA:   3'- -UCGaCUGGAG-----GUCGcUGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 57285 0.77 0.303344
Target:  5'- cAGCagGGCgUCCAGCGcgGCCUUGGCGGCg -3'
miRNA:   3'- -UCGa-CUGgAGGUCGC--UGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 57248 0.71 0.639899
Target:  5'- cGGCcucGGCgUCCGcGCGGcCCUCGACGGCc -3'
miRNA:   3'- -UCGa--CUGgAGGU-CGCU-GGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 55491 0.66 0.872623
Target:  5'- cGCgGACggCCAGCcgccgcggGACCUCGGCcACg -3'
miRNA:   3'- uCGaCUGgaGGUCG--------CUGGAGCUGuUG- -5'
29635 5' -56.1 NC_006151.1 + 54423 0.67 0.841456
Target:  5'- cGCUGGCg--CGGCG-CUUCGGCGACg -3'
miRNA:   3'- uCGACUGgagGUCGCuGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 52990 0.66 0.865145
Target:  5'- cGCUGACCUCgCGGUG-CgaCGAguACa -3'
miRNA:   3'- uCGACUGGAG-GUCGCuGgaGCUguUG- -5'
29635 5' -56.1 NC_006151.1 + 52011 0.66 0.872623
Target:  5'- cAGCUugcGCCgcgCCAGCu-CCUCGGCGAa -3'
miRNA:   3'- -UCGAc--UGGa--GGUCGcuGGAGCUGUUg -5'
29635 5' -56.1 NC_006151.1 + 50736 0.69 0.755031
Target:  5'- cAGCUGccccgGCC-CCGGCaacggagcaucaacGCCUCGACGACg -3'
miRNA:   3'- -UCGAC-----UGGaGGUCGc-------------UGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 50604 0.67 0.823826
Target:  5'- cAGCgGGCC-CCgcgccgccgcggcAGCGugcacGCCUCGGCGACg -3'
miRNA:   3'- -UCGaCUGGaGG-------------UCGC-----UGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 49051 0.72 0.578121
Target:  5'- gGGCUGGCCUUCAGCGuCCggcgCGGgGu- -3'
miRNA:   3'- -UCGACUGGAGGUCGCuGGa---GCUgUug -5'
29635 5' -56.1 NC_006151.1 + 46854 0.68 0.79821
Target:  5'- gGGCgGGCCUCCGGCGucuAgCUCGuCGGg -3'
miRNA:   3'- -UCGaCUGGAGGUCGC---UgGAGCuGUUg -5'
29635 5' -56.1 NC_006151.1 + 39591 0.66 0.893719
Target:  5'- cGCUGcGCCUCU-GCcGCCagGACAACg -3'
miRNA:   3'- uCGAC-UGGAGGuCGcUGGagCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 36337 0.69 0.741384
Target:  5'- cGGCUccgGGCC-CCGGCcgccGACCcCGGCAGCa -3'
miRNA:   3'- -UCGA---CUGGaGGUCG----CUGGaGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 36055 0.71 0.598634
Target:  5'- cGGCgagGAUCUCCucuucggcccgGGCGGCCUcuucucCGACGACg -3'
miRNA:   3'- -UCGa--CUGGAGG-----------UCGCUGGA------GCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 35740 0.66 0.893719
Target:  5'- ---cGGCuCUCCGGCGGcuaucagcCCUCGACGGa -3'
miRNA:   3'- ucgaCUG-GAGGUCGCU--------GGAGCUGUUg -5'
29635 5' -56.1 NC_006151.1 + 29498 0.71 0.619247
Target:  5'- cGCUGGCCUCgAGCcagcCCUCcGCGGCg -3'
miRNA:   3'- uCGACUGGAGgUCGcu--GGAGcUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 27255 0.69 0.751152
Target:  5'- gGGCgggGGCCcguacUCGGgGugCUCGACGACg -3'
miRNA:   3'- -UCGa--CUGGa----GGUCgCugGAGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.