Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29635 | 5' | -56.1 | NC_006151.1 | + | 133480 | 0.67 | 0.841456 |
Target: 5'- aGGC-GGCCgCgGGCGucACCUUGGCGGCg -3' miRNA: 3'- -UCGaCUGGaGgUCGC--UGGAGCUGUUG- -5' |
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29635 | 5' | -56.1 | NC_006151.1 | + | 58359 | 0.67 | 0.841456 |
Target: 5'- aAGCUGGuCCgCCGcgucGUGAUCUCGACGGa -3' miRNA: 3'- -UCGACU-GGaGGU----CGCUGGAGCUGUUg -5' |
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29635 | 5' | -56.1 | NC_006151.1 | + | 54423 | 0.67 | 0.841456 |
Target: 5'- cGCUGGCg--CGGCG-CUUCGGCGACg -3' miRNA: 3'- uCGACUGgagGUCGCuGGAGCUGUUG- -5' |
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29635 | 5' | -56.1 | NC_006151.1 | + | 110017 | 0.67 | 0.841456 |
Target: 5'- gAGCUgGACC-CCuGgGGCCUgGAgGACg -3' miRNA: 3'- -UCGA-CUGGaGGuCgCUGGAgCUgUUG- -5' |
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29635 | 5' | -56.1 | NC_006151.1 | + | 121327 | 0.68 | 0.789067 |
Target: 5'- aGGC-GGCCgCCGagcuggugcGCGACCUCGAgGGCc -3' miRNA: 3'- -UCGaCUGGaGGU---------CGCUGGAGCUgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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