miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 5' -56.1 NC_006151.1 + 112884 0.66 0.865145
Target:  5'- cGGCUG-CUUCC-GC-ACCgUCGGCGACa -3'
miRNA:   3'- -UCGACuGGAGGuCGcUGG-AGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 112038 0.66 0.872623
Target:  5'- gAGCUGGgg-CCGGCGGgCgggCGGCGGCg -3'
miRNA:   3'- -UCGACUggaGGUCGCUgGa--GCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 110966 0.66 0.886915
Target:  5'- gGGCgu-CCUCCAcgaucGCGugcGCCUCGGCcGCa -3'
miRNA:   3'- -UCGacuGGAGGU-----CGC---UGGAGCUGuUG- -5'
29635 5' -56.1 NC_006151.1 + 110017 0.67 0.841456
Target:  5'- gAGCUgGACC-CCuGgGGCCUgGAgGACg -3'
miRNA:   3'- -UCGA-CUGGaGGuCgCUGGAgCUgUUG- -5'
29635 5' -56.1 NC_006151.1 + 109934 0.77 0.325123
Target:  5'- cGCcGGCCUCUccccugGGCGGCCUCGGCcGCg -3'
miRNA:   3'- uCGaCUGGAGG------UCGCUGGAGCUGuUG- -5'
29635 5' -56.1 NC_006151.1 + 109278 0.72 0.55574
Target:  5'- cGCUGGCCgcccccuccgagaUCgAGCGgcccgccGCCUCGGCGGCa -3'
miRNA:   3'- uCGACUGG-------------AGgUCGC-------UGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 107599 0.66 0.891702
Target:  5'- aAGCUGGCCccgCCGGCGccgccgcccgccaaGCCcguggaGACGACc -3'
miRNA:   3'- -UCGACUGGa--GGUCGC--------------UGGag----CUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 107534 0.73 0.478886
Target:  5'- cGUUGGCC-CCGGCGGCCcCGcCGGCg -3'
miRNA:   3'- uCGACUGGaGGUCGCUGGaGCuGUUG- -5'
29635 5' -56.1 NC_006151.1 + 105689 0.77 0.325123
Target:  5'- cGGCgcggGGCCgacgCCGGCGcggccgcgcGCCUCGACGGCg -3'
miRNA:   3'- -UCGa---CUGGa---GGUCGC---------UGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 105294 0.66 0.879881
Target:  5'- cGC-GGCCgcgCCGGCG-CCUcCGAgGACg -3'
miRNA:   3'- uCGaCUGGa--GGUCGCuGGA-GCUgUUG- -5'
29635 5' -56.1 NC_006151.1 + 104291 0.67 0.833163
Target:  5'- cGCUGcagGCgCUgCAGCGGCugacguggCUCGACGACu -3'
miRNA:   3'- uCGAC---UG-GAgGUCGCUG--------GAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 103799 0.68 0.760815
Target:  5'- cGCUGcagGCCgcgcugUCGGCGGCCguggCGGCGGCc -3'
miRNA:   3'- uCGAC---UGGa-----GGUCGCUGGa---GCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 102511 0.7 0.681061
Target:  5'- cGGCgcggGACC-CCGGCGGCgUCuACGACc -3'
miRNA:   3'- -UCGa---CUGGaGGUCGCUGgAGcUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 102048 0.66 0.879881
Target:  5'- gAGCUGGCC-CCGcuCGACCUgGGCccgcuGCa -3'
miRNA:   3'- -UCGACUGGaGGUc-GCUGGAgCUGu----UG- -5'
29635 5' -56.1 NC_006151.1 + 100338 0.66 0.886915
Target:  5'- gGGCacgUGGCgUCUGGCgGACgUCGugGACg -3'
miRNA:   3'- -UCG---ACUGgAGGUCG-CUGgAGCugUUG- -5'
29635 5' -56.1 NC_006151.1 + 100145 0.71 0.607901
Target:  5'- uGCUGGcacgcgcCCUCCGGCGccGCCUgGAgGACa -3'
miRNA:   3'- uCGACU-------GGAGGUCGC--UGGAgCUgUUG- -5'
29635 5' -56.1 NC_006151.1 + 100115 0.72 0.547662
Target:  5'- cGCUGGCggCCAGCGccuuCCUCGGgGACc -3'
miRNA:   3'- uCGACUGgaGGUCGCu---GGAGCUgUUG- -5'
29635 5' -56.1 NC_006151.1 + 95085 0.67 0.85274
Target:  5'- cGCUGGCgUCCaugacgccguagagcAGCu-CCUCGGCGAUg -3'
miRNA:   3'- uCGACUGgAGG---------------UCGcuGGAGCUGUUG- -5'
29635 5' -56.1 NC_006151.1 + 94866 0.66 0.879881
Target:  5'- cGCUG-CUcUCGGUGACCUgCGACGAg -3'
miRNA:   3'- uCGACuGGaGGUCGCUGGA-GCUGUUg -5'
29635 5' -56.1 NC_006151.1 + 87345 0.7 0.660527
Target:  5'- uGCcgGGCCUCCAG-GGCCU-GGCGGCc -3'
miRNA:   3'- uCGa-CUGGAGGUCgCUGGAgCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.