Results 61 - 80 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 126435 | 0.7 | 0.681061 |
Target: 5'- cGCcGGCaCUaCCAGCG-CCUCGAgAGCg -3' miRNA: 3'- uCGaCUG-GA-GGUCGCuGGAGCUgUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 102511 | 0.7 | 0.681061 |
Target: 5'- cGGCgcggGACC-CCGGCGGCgUCuACGACc -3' miRNA: 3'- -UCGa---CUGGaGGUCGCUGgAGcUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 126001 | 0.7 | 0.690253 |
Target: 5'- uGCUGcgcggcaucGCCaacuucuUCCAG-GGCCUCGGCGACg -3' miRNA: 3'- uCGAC---------UGG-------AGGUCgCUGGAGCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 141254 | 0.7 | 0.691272 |
Target: 5'- gGGCgagGAgaUCCAGUcgcggGGCCUCGGCGGCu -3' miRNA: 3'- -UCGa--CUggAGGUCG-----CUGGAGCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 36055 | 0.71 | 0.598634 |
Target: 5'- cGGCgagGAUCUCCucuucggcccgGGCGGCCUcuucucCGACGACg -3' miRNA: 3'- -UCGa--CUGGAGG-----------UCGCUGGA------GCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 100145 | 0.71 | 0.607901 |
Target: 5'- uGCUGGcacgcgcCCUCCGGCGccGCCUgGAgGACa -3' miRNA: 3'- uCGACU-------GGAGGUCGC--UGGAgCUgUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 29498 | 0.71 | 0.619247 |
Target: 5'- cGCUGGCCUCgAGCcagcCCUCcGCGGCg -3' miRNA: 3'- uCGACUGGAGgUCGcu--GGAGcUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 123096 | 0.71 | 0.619247 |
Target: 5'- cGCgGACCgCCucucGCGGCgCUCGGCGGCg -3' miRNA: 3'- uCGaCUGGaGGu---CGCUG-GAGCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 132165 | 0.71 | 0.619247 |
Target: 5'- cAGCUGcgcgGCCggcaCCGGCGcGCC-CGACAGCa -3' miRNA: 3'- -UCGAC----UGGa---GGUCGC-UGGaGCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 121944 | 0.71 | 0.639899 |
Target: 5'- cGCUGGCCgccgCCGGCGACgaCGcCGAg -3' miRNA: 3'- uCGACUGGa---GGUCGCUGgaGCuGUUg -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 57248 | 0.71 | 0.639899 |
Target: 5'- cGGCcucGGCgUCCGcGCGGcCCUCGACGGCc -3' miRNA: 3'- -UCGa--CUGgAGGU-CGCU-GGAGCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 100115 | 0.72 | 0.547662 |
Target: 5'- cGCUGGCggCCAGCGccuuCCUCGGgGACc -3' miRNA: 3'- uCGACUGgaGGUCGCu---GGAGCUgUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 109278 | 0.72 | 0.55574 |
Target: 5'- cGCUGGCCgcccccuccgagaUCgAGCGgcccgccGCCUCGGCGGCa -3' miRNA: 3'- uCGACUGG-------------AGgUCGC-------UGGAGCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 49051 | 0.72 | 0.578121 |
Target: 5'- gGGCUGGCCUUCAGCGuCCggcgCGGgGu- -3' miRNA: 3'- -UCGACUGGAGGUCGCuGGa---GCUgUug -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 60946 | 0.72 | 0.588361 |
Target: 5'- gAGCUG-CC-CCAGCguggacauGACCUCGuCGACg -3' miRNA: 3'- -UCGACuGGaGGUCG--------CUGGAGCuGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 118891 | 0.73 | 0.507893 |
Target: 5'- cGGCgacgcGGCCgCCGGCGGCCUCGA--GCg -3' miRNA: 3'- -UCGa----CUGGaGGUCGCUGGAGCUguUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 107534 | 0.73 | 0.478886 |
Target: 5'- cGUUGGCC-CCGGCGGCCcCGcCGGCg -3' miRNA: 3'- uCGACUGGaGGUCGCUGGaGCuGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 84924 | 0.73 | 0.478886 |
Target: 5'- cGGCgccGCCUCCGGCGugCUCuuCGGCa -3' miRNA: 3'- -UCGac-UGGAGGUCGCugGAGcuGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 124975 | 0.74 | 0.441529 |
Target: 5'- cAGCUgGACCUgCAGCGcgugcACCUgGGCGACu -3' miRNA: 3'- -UCGA-CUGGAgGUCGC-----UGGAgCUGUUG- -5' |
|||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 71721 | 0.75 | 0.397254 |
Target: 5'- aGGCgauccaGGCCUCCAGCG-CCUCGAacACg -3' miRNA: 3'- -UCGa-----CUGGAGGUCGCuGGAGCUguUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home