miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29637 5' -53.8 NC_006151.1 + 18367 0.66 0.955482
Target:  5'- aCUCGUCCUC-GGCGUCcaggcucaCGUacGGCCCc -3'
miRNA:   3'- -GAGCGGGAGaCUGUAGaa------GCA--CUGGG- -5'
29637 5' -53.8 NC_006151.1 + 23242 0.71 0.765073
Target:  5'- cCUCGCCCUCgggggccucgggGGCAUCgcCGUGGacgaCCu -3'
miRNA:   3'- -GAGCGGGAGa-----------CUGUAGaaGCACUg---GG- -5'
29637 5' -53.8 NC_006151.1 + 26412 0.68 0.898133
Target:  5'- cCUCGCCCUCUc-CGUCUUCGUcuUCg -3'
miRNA:   3'- -GAGCGGGAGAcuGUAGAAGCAcuGGg -5'
29637 5' -53.8 NC_006151.1 + 26508 0.67 0.94274
Target:  5'- cCUCGUCCUCgucuuCAUCUUCGU--CCUc -3'
miRNA:   3'- -GAGCGGGAGacu--GUAGAAGCAcuGGG- -5'
29637 5' -53.8 NC_006151.1 + 46815 0.66 0.955482
Target:  5'- gUCGCCCUCUG-CcUCUgccccCGaGACCg -3'
miRNA:   3'- gAGCGGGAGACuGuAGAa----GCaCUGGg -5'
29637 5' -53.8 NC_006151.1 + 48819 0.66 0.951471
Target:  5'- -aCGCCUUCgccgccGAguUCgaCGUGGCCCc -3'
miRNA:   3'- gaGCGGGAGa-----CUguAGaaGCACUGGG- -5'
29637 5' -53.8 NC_006151.1 + 58080 0.66 0.959262
Target:  5'- -gCGCCCUCgcgGGCGagcUCG-GGCCCc -3'
miRNA:   3'- gaGCGGGAGa--CUGUagaAGCaCUGGG- -5'
29637 5' -53.8 NC_006151.1 + 58575 0.68 0.922381
Target:  5'- -cCGCCCgCcGGCGUCgcggcCGUGACCa -3'
miRNA:   3'- gaGCGGGaGaCUGUAGaa---GCACUGGg -5'
29637 5' -53.8 NC_006151.1 + 62280 0.67 0.94274
Target:  5'- --gGCCUUCUG-CGUgcUCGUGGCCa -3'
miRNA:   3'- gagCGGGAGACuGUAgaAGCACUGGg -5'
29637 5' -53.8 NC_006151.1 + 66776 0.67 0.94274
Target:  5'- -cCGCCCUCggGACGgcggCggCGgcggcggGGCCCg -3'
miRNA:   3'- gaGCGGGAGa-CUGUa---GaaGCa------CUGGG- -5'
29637 5' -53.8 NC_006151.1 + 70006 0.7 0.846805
Target:  5'- -aCGCUCUCgacGGCgcccGUCUgcaCGUGGCCCg -3'
miRNA:   3'- gaGCGGGAGa--CUG----UAGAa--GCACUGGG- -5'
29637 5' -53.8 NC_006151.1 + 70946 0.66 0.959262
Target:  5'- -gCGCCUUCUcGGCGgugcgCGUGGCCg -3'
miRNA:   3'- gaGCGGGAGA-CUGUagaa-GCACUGGg -5'
29637 5' -53.8 NC_006151.1 + 77546 0.69 0.859474
Target:  5'- -cCGCCC-CgcaggggagcgacGACGUCUUCGUGgacGCCCu -3'
miRNA:   3'- gaGCGGGaGa------------CUGUAGAAGCAC---UGGG- -5'
29637 5' -53.8 NC_006151.1 + 84228 0.69 0.870119
Target:  5'- -gUGCCC-CUGcugGUgUUCGUGGCCCa -3'
miRNA:   3'- gaGCGGGaGACug-UAgAAGCACUGGG- -5'
29637 5' -53.8 NC_006151.1 + 85695 0.69 0.877462
Target:  5'- gCUgGCCCaCU-ACGUCgUCGUGGCCUa -3'
miRNA:   3'- -GAgCGGGaGAcUGUAGaAGCACUGGG- -5'
29637 5' -53.8 NC_006151.1 + 86861 0.72 0.727935
Target:  5'- -gCGCCCggcgaCU-ACAUCUUCGUG-CCCg -3'
miRNA:   3'- gaGCGGGa----GAcUGUAGAAGCACuGGG- -5'
29637 5' -53.8 NC_006151.1 + 106213 0.67 0.933048
Target:  5'- gCUCGCCCUCcccGACcUgaUgGUGGCCg -3'
miRNA:   3'- -GAGCGGGAGa--CUGuAgaAgCACUGGg -5'
29637 5' -53.8 NC_006151.1 + 112527 0.66 0.962815
Target:  5'- -aCGCCCUCUuccGCGagcugaUCUUCGccGCCCa -3'
miRNA:   3'- gaGCGGGAGAc--UGU------AGAAGCacUGGG- -5'
29637 5' -53.8 NC_006151.1 + 112746 0.67 0.933048
Target:  5'- -gCGCCacg-GcCGUCUUCGUGGCCg -3'
miRNA:   3'- gaGCGGgagaCuGUAGAAGCACUGGg -5'
29637 5' -53.8 NC_006151.1 + 115588 0.67 0.933048
Target:  5'- gUCGCgCUCgaGCAgcUCgcgCGUGGCCCa -3'
miRNA:   3'- gAGCGgGAGacUGU--AGaa-GCACUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.