Results 61 - 80 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 58906 | 0.68 | 0.512939 |
Target: 5'- gGCCGCGcacaCgCGCUCCCcCGccGCGGCCgUCa -3' miRNA: 3'- -CGGUGUa---G-GCGAGGGaGC--CGCCGG-AG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 128774 | 0.68 | 0.512939 |
Target: 5'- --gGCGUaCCGCUCcacggCCUCGGUcGCCUCg -3' miRNA: 3'- cggUGUA-GGCGAG-----GGAGCCGcCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 109665 | 0.68 | 0.512939 |
Target: 5'- cGCCACcgCCGCcCCCUCaGCcGCUa- -3' miRNA: 3'- -CGGUGuaGGCGaGGGAGcCGcCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 104367 | 0.68 | 0.503568 |
Target: 5'- cGCCgACAcggagCCGCUCUCgCGGCuGGCC-Cg -3' miRNA: 3'- -CGG-UGUa----GGCGAGGGaGCCG-CCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 58944 | 0.69 | 0.44028 |
Target: 5'- cGCCGCAaagUCCacgGCcCCCUCGGUGcgcggccacGCCUCc -3' miRNA: 3'- -CGGUGU---AGG---CGaGGGAGCCGC---------CGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 65991 | 0.69 | 0.431608 |
Target: 5'- gGCCGCGagCGCgUCCUCcGCGGCgUCg -3' miRNA: 3'- -CGGUGUagGCGaGGGAGcCGCCGgAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 7269 | 0.69 | 0.431608 |
Target: 5'- cCCACGUggCCGC--CCUCGGCcaauggGGCCUCa -3' miRNA: 3'- cGGUGUA--GGCGagGGAGCCG------CCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 141680 | 0.69 | 0.431608 |
Target: 5'- aGgCAUGUCUGcCUCCCaCGGCGGCUg- -3' miRNA: 3'- -CgGUGUAGGC-GAGGGaGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 114146 | 0.69 | 0.42389 |
Target: 5'- aGCCGCGgcucgggcgcagcgaCCGCgcggCCCUCGuGCuGGCCUa -3' miRNA: 3'- -CGGUGUa--------------GGCGa---GGGAGC-CG-CCGGAg -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 135473 | 0.69 | 0.423037 |
Target: 5'- cGCCAgcgUGUCCGCgcgggCCaggcggCGcGCGGCCUCg -3' miRNA: 3'- -CGGU---GUAGGCGa----GGga----GC-CGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 38806 | 0.69 | 0.423037 |
Target: 5'- uGCCcgaGCAccCCGCgCCCgaCGGCGGCUUCc -3' miRNA: 3'- -CGG---UGUa-GGCGaGGGa-GCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 86981 | 0.69 | 0.44028 |
Target: 5'- cGCCACcgCCGCUcgCCCUCGcccgagcccCGGCCc- -3' miRNA: 3'- -CGGUGuaGGCGA--GGGAGCc--------GCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 37023 | 0.69 | 0.449049 |
Target: 5'- cGCCGCcgCCGCgcggCgCUCGGCcuCCUCc -3' miRNA: 3'- -CGGUGuaGGCGa---GgGAGCCGccGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 7011 | 0.69 | 0.457915 |
Target: 5'- -gCAUGUCCgGCcCCCgCGGCGGCCa- -3' miRNA: 3'- cgGUGUAGG-CGaGGGaGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 78747 | 0.69 | 0.457915 |
Target: 5'- cCCACGUCCGCcgUCUgcgccgaGGCGGCgCUCc -3' miRNA: 3'- cGGUGUAGGCGa-GGGag-----CCGCCG-GAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 4022 | 0.69 | 0.457915 |
Target: 5'- gGCCGCGg-CGUaggUCCa--GGCGGCCUCg -3' miRNA: 3'- -CGGUGUagGCG---AGGgagCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 126074 | 0.69 | 0.457915 |
Target: 5'- uGCCACGggggCCGUgaucucggCCgUCGGCGGCa-- -3' miRNA: 3'- -CGGUGUa---GGCGa-------GGgAGCCGCCGgag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 12799 | 0.69 | 0.466873 |
Target: 5'- cGgCGCGcCCGCUCCCUCcGCGuccCCUCu -3' miRNA: 3'- -CgGUGUaGGCGAGGGAGcCGCc--GGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 60659 | 0.69 | 0.466873 |
Target: 5'- cGCCGCGUCCucGCUCCCgUCGccGCcGCCg- -3' miRNA: 3'- -CGGUGUAGG--CGAGGG-AGC--CGcCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 139260 | 0.69 | 0.423037 |
Target: 5'- gGCCACGcccgCgCGCUCCgaCGGCGGacgcgccgcCCUCg -3' miRNA: 3'- -CGGUGUa---G-GCGAGGgaGCCGCC---------GGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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