Results 121 - 127 of 127 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 97858 | 0.77 | 0.151508 |
Target: 5'- cGCguCGUCCGCgUUCUCGGCGGCCg- -3' miRNA: 3'- -CGguGUAGGCGaGGGAGCCGCCGGag -5' |
|||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 106076 | 0.77 | 0.147807 |
Target: 5'- cGCCACcgCCGCgCCgacugggaCUCGGCGGCCa- -3' miRNA: 3'- -CGGUGuaGGCGaGG--------GAGCCGCCGGag -5' |
|||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 57465 | 0.77 | 0.144188 |
Target: 5'- gGCCAgGUgCCGCgCCg-CGGCGGCCUCg -3' miRNA: 3'- -CGGUgUA-GGCGaGGgaGCCGCCGGAG- -5' |
|||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 109931 | 0.78 | 0.130511 |
Target: 5'- cGCCGCcggCCuCUcCCCUgGGCGGCCUCg -3' miRNA: 3'- -CGGUGua-GGcGA-GGGAgCCGCCGGAG- -5' |
|||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 117871 | 0.79 | 0.112229 |
Target: 5'- cGUCGCGUUCGC-CCCUCGGCGccgacaccuccGCCUCu -3' miRNA: 3'- -CGGUGUAGGCGaGGGAGCCGC-----------CGGAG- -5' |
|||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 50834 | 0.79 | 0.112229 |
Target: 5'- gGCCcgcGCcgCCGUcCCCUCGGCGGCCg- -3' miRNA: 3'- -CGG---UGuaGGCGaGGGAGCCGCCGGag -5' |
|||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 57249 | 0.83 | 0.059026 |
Target: 5'- gGCCucgGCGUCCGCgcggCCCUCGaCGGCCUCg -3' miRNA: 3'- -CGG---UGUAGGCGa---GGGAGCcGCCGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home