miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 118886 0.69 0.466873
Target:  5'- cGCgGCGgcgaCGCggCCgC-CGGCGGCCUCg -3'
miRNA:   3'- -CGgUGUag--GCGa-GG-GaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 65991 0.69 0.431608
Target:  5'- gGCCGCGagCGCgUCCUCcGCGGCgUCg -3'
miRNA:   3'- -CGGUGUagGCGaGGGAGcCGCCGgAG- -5'
29638 3' -62.1 NC_006151.1 + 139260 0.69 0.423037
Target:  5'- gGCCACGcccgCgCGCUCCgaCGGCGGacgcgccgcCCUCg -3'
miRNA:   3'- -CGGUGUa---G-GCGAGGgaGCCGCC---------GGAG- -5'
29638 3' -62.1 NC_006151.1 + 56105 0.68 0.485055
Target:  5'- aCCGCcgCCGCUgCCUCGccggggaGGCCUUc -3'
miRNA:   3'- cGGUGuaGGCGAgGGAGCcg-----CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 128774 0.68 0.512939
Target:  5'- --gGCGUaCCGCUCcacggCCUCGGUcGCCUCg -3'
miRNA:   3'- cggUGUA-GGCGAG-----GGAGCCGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 54103 0.68 0.503568
Target:  5'- gGCCAUGUCgGCUgCgaCGGCGGCg-- -3'
miRNA:   3'- -CGGUGUAGgCGAgGgaGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 58906 0.68 0.512939
Target:  5'- gGCCGCGcacaCgCGCUCCCcCGccGCGGCCgUCa -3'
miRNA:   3'- -CGGUGUa---G-GCGAGGGaGC--CGCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 86186 0.68 0.512939
Target:  5'- cGCCGCG-CUGC-CCC-CGGCgGGCC-Cg -3'
miRNA:   3'- -CGGUGUaGGCGaGGGaGCCG-CCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 5902 0.68 0.522381
Target:  5'- cGCUGCGagUGCUgCCggggUCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUagGCGAgGG----AGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 49952 0.68 0.522381
Target:  5'- aCCugG-CCGCggCCCU-GGcCGGCCUCc -3'
miRNA:   3'- cGGugUaGGCGa-GGGAgCC-GCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 101810 0.68 0.522381
Target:  5'- cGCCccCGUccCCGCcgUCCCcgucUCGGCGGCCg- -3'
miRNA:   3'- -CGGu-GUA--GGCG--AGGG----AGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 109665 0.68 0.512939
Target:  5'- cGCCACcgCCGCcCCCUCaGCcGCUa- -3'
miRNA:   3'- -CGGUGuaGGCGaGGGAGcCGcCGGag -5'
29638 3' -62.1 NC_006151.1 + 104367 0.68 0.503568
Target:  5'- cGCCgACAcggagCCGCUCUCgCGGCuGGCC-Cg -3'
miRNA:   3'- -CGG-UGUa----GGCGAGGGaGCCG-CCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 26363 0.68 0.503568
Target:  5'- gGCCGCGUCggggcgCGCgUCCCcCGGCGGgCg- -3'
miRNA:   3'- -CGGUGUAG------GCG-AGGGaGCCGCCgGag -5'
29638 3' -62.1 NC_006151.1 + 122892 0.68 0.503568
Target:  5'- gGCCAa--CCGCgacgCCCUCGaGCG-CCUCc -3'
miRNA:   3'- -CGGUguaGGCGa---GGGAGC-CGCcGGAG- -5'
29638 3' -62.1 NC_006151.1 + 119092 0.68 0.500771
Target:  5'- gGCCGCGg-CGCUCggcgcguacgugagCCgcgCGGcCGGCCUCg -3'
miRNA:   3'- -CGGUGUagGCGAG--------------GGa--GCC-GCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 53625 0.68 0.497981
Target:  5'- aCCAgGUCgCGCUUCUgcagcucgcgcaccgUCGGCGGgCUCg -3'
miRNA:   3'- cGGUgUAG-GCGAGGG---------------AGCCGCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 52018 0.68 0.494272
Target:  5'- cGCCGCG-CCaGCU-CCUCGGCgaaGGCCg- -3'
miRNA:   3'- -CGGUGUaGG-CGAgGGAGCCG---CCGGag -5'
29638 3' -62.1 NC_006151.1 + 57341 0.68 0.475921
Target:  5'- aGCCGacaaaGUCCGCggggCCCUCGcGCcGCCg- -3'
miRNA:   3'- -CGGUg----UAGGCGa---GGGAGC-CGcCGGag -5'
29638 3' -62.1 NC_006151.1 + 133115 0.68 0.483221
Target:  5'- cGCCGCGUCCGuCgucgggggguucaugUCCCagagggacUCGGCggcggcgcgggcgugGGCCUCg -3'
miRNA:   3'- -CGGUGUAGGC-G---------------AGGG--------AGCCG---------------CCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.