Results 101 - 120 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 24868 | 0.66 | 0.590055 |
Target: 5'- aCCACcguGUCCGCcucgCCCggcCGGCgGGCCa- -3' miRNA: 3'- cGGUG---UAGGCGa---GGGa--GCCG-CCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 87192 | 0.66 | 0.590055 |
Target: 5'- cGCCGCAgCUGCUgCCgccCGG-GGCCgUCg -3' miRNA: 3'- -CGGUGUaGGCGAgGGa--GCCgCCGG-AG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 46981 | 0.66 | 0.599883 |
Target: 5'- gGCCGCcgCCGCUCCUgcccccacuUCGGCucCCg- -3' miRNA: 3'- -CGGUGuaGGCGAGGG---------AGCCGccGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 6949 | 0.66 | 0.599883 |
Target: 5'- cGCCAUcUUgGC-CCCUCGaCGGCCa- -3' miRNA: 3'- -CGGUGuAGgCGaGGGAGCcGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 11363 | 0.66 | 0.599883 |
Target: 5'- cGCUACcgCgCGCUCCgCUCG-CcGCCUCu -3' miRNA: 3'- -CGGUGuaG-GCGAGG-GAGCcGcCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 124930 | 0.66 | 0.599883 |
Target: 5'- uUCACGUCgCGggCCCUgGGCG-CCUCc -3' miRNA: 3'- cGGUGUAG-GCgaGGGAgCCGCcGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 89025 | 0.66 | 0.609733 |
Target: 5'- aGCCGCucccggcacacgAUgCGCUugcgCCCgugcgCGGUGGCCUUg -3' miRNA: 3'- -CGGUG------------UAgGCGA----GGGa----GCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 79760 | 0.66 | 0.619599 |
Target: 5'- cCCGCGgguccCCGgUCCa-CGGCGGCCg- -3' miRNA: 3'- cGGUGUa----GGCgAGGgaGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 52449 | 0.66 | 0.619599 |
Target: 5'- cGCCGCcgCCGUga---CGGCGGCCa- -3' miRNA: 3'- -CGGUGuaGGCGagggaGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 26574 | 0.66 | 0.619599 |
Target: 5'- aGCCcucucCGUCCGagccgUCCUCGGgGGgCUCa -3' miRNA: 3'- -CGGu----GUAGGCga---GGGAGCCgCCgGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 83664 | 0.66 | 0.629474 |
Target: 5'- gGCCGCGUCCucCUCgCUCaGGCuGCCg- -3' miRNA: 3'- -CGGUGUAGGc-GAGgGAG-CCGcCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 63737 | 0.66 | 0.629474 |
Target: 5'- cGCCACAccUCCgGCg-CgUCGGCGGggcguCCUCg -3' miRNA: 3'- -CGGUGU--AGG-CGagGgAGCCGCC-----GGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 31210 | 0.66 | 0.629474 |
Target: 5'- cCCGCGUCCagGCcgggCCCcCGGCcGGCCg- -3' miRNA: 3'- cGGUGUAGG--CGa---GGGaGCCG-CCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 104918 | 0.66 | 0.629474 |
Target: 5'- gGCgCGCGaCCGCgacggggCCCUCGaGCuGGCCa- -3' miRNA: 3'- -CG-GUGUaGGCGa------GGGAGC-CG-CCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 84159 | 0.66 | 0.629474 |
Target: 5'- uGCCAgcUgCGCga-CUCGGCGcGCCUCc -3' miRNA: 3'- -CGGUguAgGCGaggGAGCCGC-CGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 78130 | 0.66 | 0.629474 |
Target: 5'- uGCgGCGggCCGCgggCgCCUCGGaCGacGCCUCg -3' miRNA: 3'- -CGgUGUa-GGCGa--G-GGAGCC-GC--CGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 116087 | 0.66 | 0.629474 |
Target: 5'- aGCCGCcgCCGUcgUCCUCGucggcgauggcGCGGCgCUUg -3' miRNA: 3'- -CGGUGuaGGCGa-GGGAGC-----------CGCCG-GAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 67052 | 0.66 | 0.629474 |
Target: 5'- cGCCACcgCCua--CCUgcUGGCGGCCUUc -3' miRNA: 3'- -CGGUGuaGGcgagGGA--GCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 65857 | 0.66 | 0.633425 |
Target: 5'- cGCCuCcUCCGCUCCUccagcagccauugggUCaGCagGGCCUCg -3' miRNA: 3'- -CGGuGuAGGCGAGGG---------------AGcCG--CCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 68128 | 0.66 | 0.639351 |
Target: 5'- aGCuCGCcgCCGCUCCCgCGGagcguGGUCg- -3' miRNA: 3'- -CG-GUGuaGGCGAGGGaGCCg----CCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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