Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29638 | 3' | -62.1 | NC_006151.1 | + | 135991 | 0.66 | 0.639351 |
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Target: 5'- gGCCACcUUCGC-CCUccaCGaCGGCCUCa -3' miRNA: 3'- -CGGUGuAGGCGaGGGa--GCcGCCGGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 133421 | 0.66 | 0.639351 |
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Target: 5'- gGCCGCGgaCGCgggggUCUUGGCGGCCg- -3' miRNA: 3'- -CGGUGUagGCGag---GGAGCCGCCGGag -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 68128 | 0.66 | 0.639351 |
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Target: 5'- aGCuCGCcgCCGCUCCCgCGGagcguGGUCg- -3' miRNA: 3'- -CG-GUGuaGGCGAGGGaGCCg----CCGGag -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 96015 | 0.66 | 0.639351 |
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Target: 5'- gGCgCGCA-CCGCcUCCUCGGUGGUg-- -3' miRNA: 3'- -CG-GUGUaGGCGaGGGAGCCGCCGgag -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 99001 | 0.66 | 0.646262 |
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Target: 5'- cGCCACG-CCGCgcacggCCgUCGaggugcgcgucuccGCGGcCCUCg -3' miRNA: 3'- -CGGUGUaGGCGa-----GGgAGC--------------CGCC-GGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 67171 | 0.66 | 0.649222 |
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Target: 5'- uCCugGUcCCGCUcaucgCCCUCGcGCuGGCCa- -3' miRNA: 3'- cGGugUA-GGCGA-----GGGAGC-CG-CCGGag -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 19723 | 0.66 | 0.649222 |
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Target: 5'- gGCCGag-CCGaagCCCgcgCGGCGGUCgUCg -3' miRNA: 3'- -CGGUguaGGCga-GGGa--GCCGCCGG-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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