miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 87192 0.66 0.590055
Target:  5'- cGCCGCAgCUGCUgCCgccCGG-GGCCgUCg -3'
miRNA:   3'- -CGGUGUaGGCGAgGGa--GCCgCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 89025 0.66 0.609733
Target:  5'- aGCCGCucccggcacacgAUgCGCUugcgCCCgugcgCGGUGGCCUUg -3'
miRNA:   3'- -CGGUG------------UAgGCGA----GGGa----GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 96015 0.66 0.639351
Target:  5'- gGCgCGCA-CCGCcUCCUCGGUGGUg-- -3'
miRNA:   3'- -CG-GUGUaGGCGaGGGAGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 96198 0.7 0.373838
Target:  5'- cGCCAUGgggcgCCGCgUCgCCguggCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUa----GGCG-AG-GGa---GCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 97858 0.77 0.151508
Target:  5'- cGCguCGUCCGCgUUCUCGGCGGCCg- -3'
miRNA:   3'- -CGguGUAGGCGaGGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 99001 0.66 0.646262
Target:  5'- cGCCACG-CCGCgcacggCCgUCGaggugcgcgucuccGCGGcCCUCg -3'
miRNA:   3'- -CGGUGUaGGCGa-----GGgAGC--------------CGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 101810 0.68 0.522381
Target:  5'- cGCCccCGUccCCGCcgUCCCcgucUCGGCGGCCg- -3'
miRNA:   3'- -CGGu-GUA--GGCG--AGGG----AGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 101843 0.67 0.531889
Target:  5'- cGCCGCccCCGC-CCCggcaccCGGCGGCg-- -3'
miRNA:   3'- -CGGUGuaGGCGaGGGa-----GCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 102506 0.7 0.389803
Target:  5'- cGCCGCGgcgCgGgaCCC-CGGCGGCgUCu -3'
miRNA:   3'- -CGGUGUa--GgCgaGGGaGCCGCCGgAG- -5'
29638 3' -62.1 NC_006151.1 + 103183 0.67 0.54146
Target:  5'- cGCCAUggaCGCcgCCCU-GGCGGCCg- -3'
miRNA:   3'- -CGGUGuagGCGa-GGGAgCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 103253 0.72 0.314535
Target:  5'- cGgCACAUCCGCgCCaUgGGCGGCCa- -3'
miRNA:   3'- -CgGUGUAGGCGaGGgAgCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 103799 0.73 0.245034
Target:  5'- cGCUGCAggCCGCgCUgUCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUa-GGCGaGGgAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 104367 0.68 0.503568
Target:  5'- cGCCgACAcggagCCGCUCUCgCGGCuGGCC-Cg -3'
miRNA:   3'- -CGG-UGUa----GGCGAGGGaGCCG-CCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 104918 0.66 0.629474
Target:  5'- gGCgCGCGaCCGCgacggggCCCUCGaGCuGGCCa- -3'
miRNA:   3'- -CG-GUGUaGGCGa------GGGAGC-CG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 106076 0.77 0.147807
Target:  5'- cGCCACcgCCGCgCCgacugggaCUCGGCGGCCa- -3'
miRNA:   3'- -CGGUGuaGGCGaGG--------GAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 107504 0.67 0.54146
Target:  5'- cGCCGCcgGUCgacccgcccaCGCUCCCgccguuggcccCGGCGGCCcCg -3'
miRNA:   3'- -CGGUG--UAG----------GCGAGGGa----------GCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 108567 0.71 0.335909
Target:  5'- cCCGCGUCCGCguccUCCUCcGCcGCCUCg -3'
miRNA:   3'- cGGUGUAGGCGa---GGGAGcCGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 109245 0.67 0.580255
Target:  5'- aGCCGCcgCgGuCUCCgCU-GGCGGCCcCg -3'
miRNA:   3'- -CGGUGuaGgC-GAGG-GAgCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 109665 0.68 0.512939
Target:  5'- cGCCACcgCCGCcCCCUCaGCcGCUa- -3'
miRNA:   3'- -CGGUGuaGGCGaGGGAGcCGcCGGag -5'
29638 3' -62.1 NC_006151.1 + 109931 0.78 0.130511
Target:  5'- cGCCGCcggCCuCUcCCCUgGGCGGCCUCg -3'
miRNA:   3'- -CGGUGua-GGcGA-GGGAgCCGCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.