Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29638 | 3' | -62.1 | NC_006151.1 | + | 135473 | 0.69 | 0.423037 |
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Target: 5'- cGCCAgcgUGUCCGCgcgggCCaggcggCGcGCGGCCUCg -3' miRNA: 3'- -CGGU---GUAGGCGa----GGga----GC-CGCCGGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 135901 | 0.7 | 0.373838 |
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Target: 5'- cGUCGCcgCCGCgaCCC-CGGCGGUCg- -3' miRNA: 3'- -CGGUGuaGGCGa-GGGaGCCGCCGGag -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 135991 | 0.66 | 0.639351 |
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Target: 5'- gGCCACcUUCGC-CCUccaCGaCGGCCUCa -3' miRNA: 3'- -CGGUGuAGGCGaGGGa--GCcGCCGGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 137424 | 0.75 | 0.198078 |
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Target: 5'- cGCCGCcgCCGCggggucCgCCUCcGCGGCCUCc -3' miRNA: 3'- -CGGUGuaGGCGa-----G-GGAGcCGCCGGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 139260 | 0.69 | 0.423037 |
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Target: 5'- gGCCACGcccgCgCGCUCCgaCGGCGGacgcgccgcCCUCg -3' miRNA: 3'- -CGGUGUa---G-GCGAGGgaGCCGCC---------GGAG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 139583 | 0.67 | 0.560765 |
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Target: 5'- cGCCugGgcUCgCGCcccCCCgagCGGCGGCC-Cg -3' miRNA: 3'- -CGGugU--AG-GCGa--GGGa--GCCGCCGGaG- -5' |
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| 29638 | 3' | -62.1 | NC_006151.1 | + | 141680 | 0.69 | 0.431608 |
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Target: 5'- aGgCAUGUCUGcCUCCCaCGGCGGCUg- -3' miRNA: 3'- -CgGUGUAGGC-GAGGGaGCCGCCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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