miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 101810 0.68 0.522381
Target:  5'- cGCCccCGUccCCGCcgUCCCcgucUCGGCGGCCg- -3'
miRNA:   3'- -CGGu-GUA--GGCG--AGGG----AGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 99001 0.66 0.646262
Target:  5'- cGCCACG-CCGCgcacggCCgUCGaggugcgcgucuccGCGGcCCUCg -3'
miRNA:   3'- -CGGUGUaGGCGa-----GGgAGC--------------CGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 97858 0.77 0.151508
Target:  5'- cGCguCGUCCGCgUUCUCGGCGGCCg- -3'
miRNA:   3'- -CGguGUAGGCGaGGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 96198 0.7 0.373838
Target:  5'- cGCCAUGgggcgCCGCgUCgCCguggCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUa----GGCG-AG-GGa---GCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 96015 0.66 0.639351
Target:  5'- gGCgCGCA-CCGCcUCCUCGGUGGUg-- -3'
miRNA:   3'- -CG-GUGUaGGCGaGGGAGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 89025 0.66 0.609733
Target:  5'- aGCCGCucccggcacacgAUgCGCUugcgCCCgugcgCGGUGGCCUUg -3'
miRNA:   3'- -CGGUG------------UAgGCGA----GGGa----GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 87192 0.66 0.590055
Target:  5'- cGCCGCAgCUGCUgCCgccCGG-GGCCgUCg -3'
miRNA:   3'- -CGGUGUaGGCGAgGGa--GCCgCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 86981 0.69 0.44028
Target:  5'- cGCCACcgCCGCUcgCCCUCGcccgagcccCGGCCc- -3'
miRNA:   3'- -CGGUGuaGGCGA--GGGAGCc--------GCCGGag -5'
29638 3' -62.1 NC_006151.1 + 86186 0.68 0.512939
Target:  5'- cGCCGCG-CUGC-CCC-CGGCgGGCC-Cg -3'
miRNA:   3'- -CGGUGUaGGCGaGGGaGCCG-CCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 85443 0.7 0.414569
Target:  5'- cGCCGCggCCGcCUUCCUgGGCcgcGGCCa- -3'
miRNA:   3'- -CGGUGuaGGC-GAGGGAgCCG---CCGGag -5'
29638 3' -62.1 NC_006151.1 + 84188 0.67 0.551086
Target:  5'- cGCCGCcgCCGUgccCCCg-GGCGGCg-- -3'
miRNA:   3'- -CGGUGuaGGCGa--GGGagCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 84159 0.66 0.629474
Target:  5'- uGCCAgcUgCGCga-CUCGGCGcGCCUCc -3'
miRNA:   3'- -CGGUguAgGCGaggGAGCCGC-CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 83664 0.66 0.629474
Target:  5'- gGCCGCGUCCucCUCgCUCaGGCuGCCg- -3'
miRNA:   3'- -CGGUGUAGGc-GAGgGAG-CCGcCGGag -5'
29638 3' -62.1 NC_006151.1 + 83339 0.67 0.570489
Target:  5'- gGCgCGCGUCCacguGCUCCC-CGGCGcGCg-- -3'
miRNA:   3'- -CG-GUGUAGG----CGAGGGaGCCGC-CGgag -5'
29638 3' -62.1 NC_006151.1 + 82393 0.74 0.223112
Target:  5'- gGCCACGagcUCCGCgCCCgagGGCGGCCcCg -3'
miRNA:   3'- -CGGUGU---AGGCGaGGGag-CCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 81347 0.7 0.39795
Target:  5'- cGCCGCcgCCGCgcccggggCCC-CGGCGGgCg- -3'
miRNA:   3'- -CGGUGuaGGCGa-------GGGaGCCGCCgGag -5'
29638 3' -62.1 NC_006151.1 + 79760 0.66 0.619599
Target:  5'- cCCGCGgguccCCGgUCCa-CGGCGGCCg- -3'
miRNA:   3'- cGGUGUa----GGCgAGGgaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 78747 0.69 0.457915
Target:  5'- cCCACGUCCGCcgUCUgcgccgaGGCGGCgCUCc -3'
miRNA:   3'- cGGUGUAGGCGa-GGGag-----CCGCCG-GAG- -5'
29638 3' -62.1 NC_006151.1 + 78519 0.7 0.381765
Target:  5'- cCCGCGaUCGCggaCCCggCGGgGGCCUCg -3'
miRNA:   3'- cGGUGUaGGCGa--GGGa-GCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 78130 0.66 0.629474
Target:  5'- uGCgGCGggCCGCgggCgCCUCGGaCGacGCCUCg -3'
miRNA:   3'- -CGgUGUa-GGCGa--G-GGAGCC-GC--CGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.